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Citing CMDGA
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Annotation type
30
histone modifications
3
accessible chromatin
3
gene expression
2
target gene predictions
1
chromatin state
Annotation Category
2
Target gene links
Annotation type Category
2
ATAC-seq
DNase-seq
2
H3K27ac ChIP-Seq
1
pCHi-C
1
snATAC-seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
51
HeLa-S3
37
H1-hESC
19
HFFc6
16
K562
6
GM12878
6
H9
6
lymphocyte
6
olfactory receptor cell
4
CyT49
4
HUES8
4
iPSC derived cell line
3
cardiomyocytes (cardiac muscle cell)
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic delta cell
3
psoas muscle
2
CD4-positive, alpha-beta T cell
2
CD8-positive, alpha-beta T cell
2
HCT116
2
activated CD4-positive, alpha-beta T cell
2
aorta
2
heart left ventricle
2
heart right ventricle
2
liver
2
lymphocyte of B lineage (iPSC)
2
macrophage
2
megakaryocyte
2
monocyte
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
pancreas
2
thymus
1
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1
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1
B-lymphoblastoid cell line
1
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1
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GM18486
1
GM18505
1
GM18507
1
GM18508
1
GM18516
1
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1
GM19099
1
GM19141
1
GM19193
1
GM19204
1
GM19238
1
GM19239
1
GM19240
1
HepG2
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
activated CD8-positive, alpha-beta T cell
1
adipose tissue
1
adrenal gland
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
bladder (urinary bladder)
1
cardiac precursors (cardiac muscle cell)
1
cell
1
conventional dendritic cell
1
dorsolateral prefrontal cortex
1
embryonic stem cell
1
endothelial cell
1
endothelial cell of umbilical vein
1
erythroblast
1
esophagus
1
fibroblast cell line
1
gastric (mucosa of stomach)
1
heart
1
inflammatory macrophage
1
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1
lung
1
memory B cell
1
mesenchymal stem cell
1
mesendoderm
1
natural killer cell
1
natural killer cell mediated cytotoxicity
1
neural progenitor cell
1
neutrophil
1
non-classical monocyte
1
ovary
1
pancreatic acinar cell
1
pancreatic ductal cell
1
pancreatic polypeptide-secreting cell
1
pancreatic stellate cell
1
plasmacytoid dendritic cell
1
regulatory T cell
1
right cardiac atrium
1
sigmoid colon
1
small intestine
1
spleen
1
stellate neuron
1
trophoblast
1
undifferentiated ESC (H9 cell line)
1
white adipose cell
Date released
1
January, 2021
1
May, 2020
November, 2021
Software used
1
chicago
1
cicero
Lab
1
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
1
AMP
1
T1D
RFA
1
AMP
1
T1D
biosample_term_name!
Brodmann (1909) area 46
annotation_type_category!
DNase-seq
month_released!
November, 2021
Showing 2 of 2 results
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Download
FileSet
DSR813PSH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR603PAJ
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP