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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
30
histone modifications
10
candidate regulatory elements
7
accessible chromatin
5
target gene predictions
4
chromatin state
4
gene expression
3
Fine-mapped variants
2
eQTL
2
variant allelic effects
Annotation Category
5
Target gene links
Annotation type Category
4
DNase-seq
2
ATAC-seq
2
ChIP-seq
2
H3K27ac ChIP-Seq
1
snATAC-seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
3
primary cell
2
tissue
Biosample term
55
HeLa-S3
39
H1-hESC
23
K562
21
stomach
20
heart
19
A549
19
CD14-positive monocyte
19
HFFc6
17
adrenal gland
17
lung
17
small intestine
16
brain
16
muscle of arm
15
placenta
14
common myeloid progenitor, CD34-positive
14
kidney
14
large intestine
14
muscle of leg
13
left lung
13
muscle of back
13
thymus
11
right lung
10
hematopoietic multipotent progenitor cell
10
liver
10
pituitary stalk
10
right kidney
9
B cell
9
CD4-positive, alpha-beta memory T cell
9
left kidney
9
renal cortex interstitium
9
renal pelvis
8
GM12878
8
H9
8
adipose tissue
8
psoas muscle
8
spinal cord
8
spleen
7
CD8-positive, alpha-beta memory T cell
7
heart left ventricle
7
lymphocyte
7
sigmoid colon
7
trophoblast cell
6
MCF-7
6
adipocyte
6
dendritic cell
6
mononuclear cell
6
olfactory receptor cell
6
ovary
5
body of pancreas
5
gastrocnemius medialis
5
heart right ventricle
5
muscle of trunk
5
natural killer cell
5
neural progenitor cell
5
pancreas
5
thyroid gland
5
transverse colon
4
CyT49
4
HUES8
4
T cell
4
aorta
4
chorionic villus
4
endocrine pancreas
4
endothelial cell of umbilical vein
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
iPSC derived cell line
4
mesenchymal stem cell
4
regulatory T cell
3
CD8-positive, alpha-beta T cell
3
HCT116
3
Peyer's patch
3
SK-N-SH
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
breast epithelium
3
caudate nucleus
3
chorion membrane
3
coronary artery
3
endometrium adenocarcinoma
3
epithelial cell of prostate
3
esophagus
3
fibroblast of cardiac tissue
3
foreskin fibroblast
3
hepatocyte
3
immortal human breast epithelial cell line cell
3
keratinocyte
3
layer of hippocampus
3
mammary gland epithelial cell
3
mesendoderm
3
naive T cell
3
neurosphere
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic delta cell
3
retina
3
skeletal muscle myoblast
3
skeletal muscle tissue
3
testis
3
tibial nerve
3
trophoblast
3
upper lobe of left lung
2
22Rv1
2
A673
2
Ammon's horn
2
BJAB cell
2
Brodmann (1909) area 46
2
CD4-positive helper T cell
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
H7-hESC
2
HAP-1
2
HT-29
2
HepG2
2
IMR-90
2
Jurkat
2
KARPAS-422 cell
2
LNCaP clone FGC
2
LoVo cell
2
MCF 10A cell
2
MM.1S
2
NAMALWA cell
2
OCI-LY7
2
PC-9
2
Panc1
2
SK-N-DZ
2
T-cell
2
T47D
2
THP-1
2
U937
2
angular gyrus
2
ascending aorta
2
astrocyte
2
bipolar neuron
2
bronchial epithelial cell
2
cardiac muscle cell
2
cardiomyocytes (cardiac muscle cell)
2
cerebellum
2
cingulate gyrus
2
colonic mucosa
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
duodenal mucosa
2
endodermal cell
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
fibroblast of breast
2
frontal cortex
2
iPS DF 19.11
2
kidney tubule cell
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
lower leg skin
2
macrophage
2
monocyte
2
mucosa of rectum
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
neutrophil
2
omental fat pad
2
osteoblast
2
pancreatic acinar cell
2
pancreatic ductal cell
2
parathyroid adenoma
2
prostate gland
2
right atrium auricular region
2
right cardiac atrium
2
right renal cortex interstitium
2
right renal pelvis
2
skin fibroblast
2
stomach smooth muscle
2
substantia nigra
2
temporal lobe
2
thoracic aorta
2
tibial artery
2
tongue
2
urinary bladder
2
uterus
2
vagina
1
8988T
1
A172
1
ACC112
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08395 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
AG20443
1
B cell, CD19-positive
Organ
2
artery
2
blood vessel
2
limb
2
vasculature
Life stage
2
adult
Date released
2
May, 2021
2
September, 2022
1
January, 2021
Software used
2
abc
2
r
chicago
1
cicero
Lab
2
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
1
Kyle Gaulton, UCSD
Project
4
AMP
1
T1D
RFA
4
AMP
ENCODE3
1
T1D
award.rfa!
ENCODE3
software_used.software.name!
chicago
Showing 5 of 5 results
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Download
FileSet
DSR780QVZ
released
Annotation file set
: Target gene predictions for BSS01838 tibial artery from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR685TUQ
released
Annotation file set
: Target gene predictions for BSS01837 tibial artery from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR485QCY
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR886AVL
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-Corces2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR813PSH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D