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Schema
Citing CMDGA
Clear Filters
Annotation type
30
histone modifications
7
candidate regulatory elements
5
accessible chromatin
3
gene expression
3
target gene predictions
1
chromatin state
Annotation Category
3
Gene expression levels
3
Target gene links
Annotation type Category
2
RNA-seq
1
ATAC-seq
1
pCHi-C
1
scRNA-seq
1
snATAC-seq
Available data
3
bed bed3+
3
tsv
1
txt
File set status
6
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
6
primary cell
Biosample term
54
HeLa-S3
46
H1-hESC
23
heart
22
K562
21
kidney
20
stomach
19
HFFc6
18
A549
18
lung
17
brain
17
endothelial cell
17
epithelial cell of proximal tubule
17
monocyte
16
adrenal gland
16
hepatocyte
16
muscle of arm
16
small intestine
15
glomerular endothelial cell
14
placenta
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
13
muscle of leg
13
thymus
12
islet of Langerhans
12
neural progenitor cell
11
B cell
11
cardiomyocytes
11
hematopoietic multipotent progenitor cell
11
regulatory T cell
11
right lung
10
T-helper 1 cell
10
T-helper 17 cell
10
adipose tissue
10
liver
10
pericyte cell
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
EndoC_BH1
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
left kidney
9
progenitor cell of endocrine pancreas
9
renal cortex interstitium
9
renal pelvis
9
smooth muscle cell
8
heart left ventricle
8
pancreatic ductal cell
8
spleen
7
CD8-positive, alpha-beta memory T cell
7
GM12878
7
H9
7
cardiomyocytes (cardiac muscle cell)
7
kidney loop of Henle thin ascending limb epithelial cell
7
lymphocyte
7
pancreatic delta cell
7
psoas muscle
7
spinal cord
6
CD8-positive, alpha-beta T cell
6
T-helper 2 cell
6
body of pancreas
6
glomerular visceral epithelial cell
6
heart right ventricle
6
kidney interstitial cell
6
mononuclear cell
6
natural killer cell
6
olfactory receptor cell
6
ovary
6
pancreatic alpha cell
6
pancreatic beta cell
6
sigmoid colon
5
MCF-7
5
aorta
5
cardiac precursors (cardiac muscle cell)
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
macrophage
5
memory B cell
5
mesangial cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
pancreatic acinar cell
5
subcutaneous adipose tissue
5
tibial nerve
5
trophoblast cell
4
CD14-positive monocyte
4
CyT49
4
HUES8
4
T cell
4
adipocyte
4
adult endothelial progenitor cell
4
astrocyte
4
bone tissue
4
caudate nucleus
4
cerebellum
4
chorionic villus
4
colon epithelial cell
4
endocrine pancreas
4
endothelial cell of hepatic sinusoid
4
fibroblast
4
fibroblast of cardiac tissue
4
foreskin keratinocyte
4
frontal cortex
4
gamma-delta T cell
4
gastrocnemius medialis
4
iPSC derived cell line
4
keratinocyte
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
mammary gland epithelial cell
4
mesenchymal stem cell
4
muscle of trunk
4
nephron progenitor
4
omental fat pad
4
pancreas
4
retina
4
right atrium auricular region
4
skeletal muscle satellite cell
4
skeletal muscle tissue
4
testis
4
thyroid gland
4
transverse colon
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
Ammon's horn
3
B Cell
3
CD4-positive, alpha-beta T cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
HCT116
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Peyer's patch
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
S-shaped body
3
T Cell
3
Transitional Principal-Intercalated Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
ascending aorta
3
central memory CD8-positive, alpha-beta T cell
3
chorion membrane
3
coronary artery
3
effector memory CD8-positive, alpha-beta T cell
3
endometrium adenocarcinoma
3
endothelial cell of umbilical vein
3
esophagus
3
fibroblast of dermis
3
fibroblast of lung
3
hepatocyte(AFP)
3
immortal human breast epithelial cell line cell
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
Life stage
1
adult
Date released
2
May, 2021
1
August, 2021
1
January, 2021
1
May, 2020
1
November, 2021
Software used
3
r
1
abc
1
chicago
1
cicero
1
seurat
Lab
3
AMP-T2D consortium
Jesse Engreitz, Stanford University
1
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Kyle Gaulton, UCSD
Project
4
AMP
1
ENCODE
1
T1D
RFA
3
AMP
1
AMP2
1
ENCODE3
1
T1D
lab.title!
Jesse Engreitz, Stanford University
Showing 6 of 6 results
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Download
FileSet
DSR786GAR
released
Annotation file set
: Target gene predictions of T Lymphocyte 1 (CD8+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR072FLD
released
Annotation file set
: GSE118165 gene expression annotation of normal CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579KZW
released
Annotation file set
: GSE118165 gene expression annotation of LPS-stimulated CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR512ARP
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for CD8-positive, alpha-beta T cell
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR813PSH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR603PAJ
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP