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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
target gene predictions
Annotation Category
1
Target gene links
1
cis-regulatory elements
Annotation type Category
38
ChIP-seq
10
DNase-seq
4
ATAC-seq
2
H3K27ac ChIP-Seq
2
RNA-seq
2
snATAC-seq
1
pCHi-C
1
scRNA-seq
Available data
2
bed bed3+
1
bigWig
File set status
2
released
Genome assembly (visualization)
3
hg19
GRCh38
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
8
pancreatic alpha cell
8
pancreatic beta cell
8
pancreatic delta cell
7
endothelial cell
6
fibroblast
6
macrophage
5
smooth muscle cell
4
myofibroblast cell
4
pancreatic acinar cell
4
pancreatic ductal cell
4
pancreatic polypeptide-secreting cell
4
skeletal muscle fiber
3
T cell
3
basal cell
3
enterocyte
3
mesenchymal stem cell
3
natural killer cell
3
pancreatic stellate cell
3
type I muscle cell
3
type II muscle cell
2
CD8-positive, alpha-beta T cell
2
Schwann cell
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
adipocyte
2
capillary endothelial cell
2
conventional dendritic cell
2
epithelial cell of esophagus
2
extracellular matrix secreting cell
2
goblet cell
2
leukocyte
2
megakaryocyte
2
memory B cell
2
monocyte
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell mediated cytotoxicity
2
non-classical monocyte
2
plasmacytoid dendritic cell
2
regulatory T cell
2
skeletal muscle satellite cell
2
stellate neuron
2
type II pneumocyte
2
vascular associated smooth muscle cell
1
B cell
1
Satellite Cells, Skeletal Muscle
1
bronchial goblet cell
1
cardiac muscle cell
1
cell
1
ciliated cell
1
club cell
1
cortical cell of adrenal gland
1
endothelial cell of artery
1
endothelial cell of lymphatic vessel
1
erythrocyte
1
glial cell
1
granulosa cell
1
hepatocyte
1
keratinocyte
1
kidney distal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mammary gland epithelial cell
1
mast cell
1
mesothelial cell
1
neural cell
1
neuroendocrine cell
1
pancreatic endocrine cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
parietal cell
1
peptic cell
1
pericyte cell
1
proximal tubule cells with injury markers
1
thyroid follicular cell
1
type I pneumocyte
Date released
2
January, 2021
Software used
1
cicero
1
macs
Lab
2
Kyle Gaulton, UCSD
Project
2
T1D
RFA
2
T1D
assembly!
GRCh38
Showing 2 of 2 results
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Download
FileSet
DSR813PSH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR805RPA
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D