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Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
1
chromatin state
Annotation Category
3
Target gene links
1
cis-regulatory elements
Annotation type Category
3
ATAC-seq
2
DNase-seq
2
H3K27ac ChIP-Seq
1
ChIP-seq
Available data
3
bed bed3+
1
bed bed9+
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
21
heart
21
stomach
20
A549
19
CD14-positive monocyte
18
brain
16
adrenal gland
16
kidney
16
lung
16
muscle of arm
16
muscle of leg
16
small intestine
15
placenta
common myeloid progenitor, CD34-positive
14
large intestine
13
left lung
13
muscle of back
12
thymus
11
right lung
10
adipocyte
10
hematopoietic multipotent progenitor cell
10
liver
10
pericyte cell
10
pituitary stalk
10
right kidney
9
B cell
9
CD4-positive, alpha-beta memory T cell
9
K562
9
left kidney
9
renal cortex interstitium
9
renal pelvis
9
spinal cord
8
heart left ventricle
7
CD8-positive, alpha-beta memory T cell
7
MCF-7
7
adipose tissue
7
endothelial cell of umbilical vein
7
fibroblast of lung
7
mature neutrophil
7
smooth muscle cell
7
spleen
7
trophoblast cell
6
dendritic cell
6
endothelial cell
6
keratinocyte
6
left cardiac atrium
6
mononuclear cell
6
sigmoid colon
5
CD14-positive, CD16-negative classical monocyte
5
HeLa-S3
5
body of pancreas
5
embryonic stem cell
5
erythroblast
5
fibroblast
5
fibroblast of dermis
5
foreskin fibroblast
5
gastrocnemius medialis
5
heart right ventricle
5
muscle of trunk
5
ovary
5
psoas muscle
5
skeletal muscle myoblast
5
temporal lobe
5
thyroid gland
5
transverse colon
4
CD4-positive, alpha-beta T cell
4
CD8-positive, alpha-beta T cell
4
GM12878
4
H1-hESC
4
HepG2
4
SK-N-SH
4
T cell
4
alternatively activated macrophage
4
angular gyrus
4
aorta
4
astrocyte
4
caudate nucleus
4
chorionic villus
4
colon epithelial cell
4
coronary artery
4
endocrine pancreas
4
fibroblast of cardiac tissue
4
foreskin keratinocyte
4
hepatocyte
4
layer of hippocampus
4
mammary gland epithelial cell
4
mesenchymal stem cell
4
natural killer cell
4
neural progenitor cell
4
pancreas
4
tibial nerve
3
IMR-90
3
KARPAS-422 cell
3
Peyer's patch
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
ascending aorta
3
breast epithelium
3
cardiac muscle cell
3
chorion membrane
3
cingulate gyrus
3
colonic mucosa
3
duodenal mucosa
3
endometrium adenocarcinoma
3
epithelial cell of prostate
3
immortal human breast epithelial cell line cell
3
inflammatory macrophage
3
islet of Langerhans
3
luminal epithelial cell of mammary gland
3
mammary epithelial cell
3
mucosa of rectum
3
naive T cell
3
neurosphere
3
osteoblast
3
pancreatic A cell
3
regulatory T cell
3
retina
3
right cardiac atrium
3
skeletal muscle satellite cell
3
skeletal muscle tissue
3
skin fibroblast
3
stomach smooth muscle
3
substantia nigra
3
testis
3
thoracic aorta
3
tibial artery
3
type B pancreatic cell
3
upper lobe of left lung
2
22Rv1
2
A673
2
AG04449 cell
2
AG04450 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
BE(2)-C
2
BJ cell
2
BJAB cell
2
Brodmann (1909) area 46
2
CD4-positive helper T cell
2
Caco-2 cell
2
ESC derived cell line
2
GM06990
2
GM08714
2
GM12864
2
GM12865
2
GM12875
2
GM12891
2
GM12892
2
GM19238
2
GM19239
2
GM19240
2
H7-hESC
2
H9
2
HAP-1
2
HCT-116 cell
2
HEK293
2
HL-60
2
HT-29
2
Jurkat
2
LNCaP clone FGC
2
LoVo cell
2
MCF 10A cell
2
MM.1S
2
NAMALWA cell
2
NB4
2
NT2-D1 cell
2
OCI-LY7
2
PC-9
2
Panc1
2
SK-N-DZ
2
SK-N-MC
2
T-cell
2
T47D
2
THP-1
2
U937
2
WERI-Rb-1
2
bipolar neuron
2
blood vessel smooth muscle cell
2
bronchial epithelial cell
2
cerebellum
2
choroid plexus epithelial cell
2
cortical cell of adrenal gland
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
endodermal cell
2
enteric smooth muscle cell
2
epithelial cell of proximal tubule
2
esophagus
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
fibroblast of breast
2
fibroblast of mammary gland
2
fibroblast of pulmonary artery
2
fibroblast of villous mesenchyme
2
frontal cortex
2
gabaergic neuron
2
germinal matrix
2
glutamatergic neuron
Life stage
1
child
Date released
2
May, 2021
1
May, 2022
1
November, 2021
Software used
33
macs
7
encode-ccres
3
abc
3
r
1
chicago
1
chromhmm
1
cicero
1
seurat
Lab
2
Jesse Engreitz, Stanford University
1
AMP-T2D consortium
1
Bing Ren, UCSD
Project
3
AMP
1
ENCODE
RFA
3
AMP
1
ENCODE3
biosample_term_name!
common myeloid progenitor, CD34-positive
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR271DAI
released
Annotation file set
: Chromatin state of CD8-positive, alpha-beta T cell from BLUEPRINT ChromHmm Segmentation of ChIP-Seq data
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR786GAR
released
Annotation file set
: Target gene predictions of T Lymphocyte 1 (CD8+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR485QCY
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR886AVL
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-Corces2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP