Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
48
ChIP-seq
18
DNase-seq
6
ATAC-seq
3
H3K27ac ChIP-Seq
3
snATAC-seq
2
RNA-seq
1
pCHi-C
1
scRNA-seq
Available data
3
bed bed3+
2
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
22
fibroblast
19
endothelial cell
17
macrophage
12
excitatory neuron
12
smooth muscle cell
10
pancreatic alpha cell
10
pancreatic beta cell
10
pericyte cell
pancreatic delta cell
8
T cell
7
astrocyte
7
pancreatic acinar cell
7
skeletal muscle fiber
6
enterocyte
6
pancreatic ductal cell
5
erythroblast
5
inhibitory neuron
5
skeletal muscle satellite cell
5
type II pneumocyte
4
B cell
4
basal cell
4
cortical cell of adrenal gland
4
myofibroblast cell
4
pancreatic polypeptide-secreting cell
4
type I muscle cell
4
type II muscle cell
3
CD8-positive, alpha-beta T cell
3
adipocyte
3
colon epithelial cell
3
endothelial cell of lymphatic vessel
3
goblet cell
3
keratinocyte
3
megakaryocyte
3
memory B cell
3
mesenchymal stem cell
3
mesothelial cell
3
natural killer cell
3
pancreatic stellate cell
3
type I pneumocyte
2
Muller cell
2
Schwann cell
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
blood vessel smooth muscle cell
2
capillary endothelial cell
2
ciliated cell
2
club cell
2
conventional dendritic cell
2
endocardial cell
2
endothelial cell of hepatic sinusoid
2
enteric neuron
2
enteric smooth muscle cell
2
epithelial cell of esophagus
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of cardiac tissue
2
gabaergic neuron
2
glial cell
2
glutamatergic neuron
2
hepatocyte
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mammary gland epithelial cell
2
mast cell
2
mesangial cell
2
monocyte
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell mediated cytotoxicity
2
non-classical monocyte
2
oligodendrocyte precursor cell
2
parietal cell
2
peptic cell
2
plasmacytoid dendritic cell
2
regulatory T cell
2
schwann cell
2
smooth muscle cell of the esophagus
2
stellate neuron
2
thyroid follicular cell
2
vascular associated smooth muscle cell
1
CD4-positive, alpha-beta T cell
1
Satellite Cells, Skeletal Muscle
1
alveolar macrophage
1
basal cell of epidermis
1
bronchial goblet cell
1
cardiac endothelial cell
1
cardiac muscle cell
1
cell
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colon goblet cell
1
eccrine cell
1
endothelial cell of artery
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
erythrocyte
1
extravillous trophoblast
1
fetal thymocyte
1
fibroblast of the aortic adventitia
1
foveolar cell of stomach
1
gastric goblet cell
1
granular cell of epidermis
1
granulosa cell
1
hepatic stellate cell
1
hepatoblast
1
intestinal tuft cell
1
islet of Langerhans
1
kidney distal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
luteal cell
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mature NK T cell
1
melanocyte
1
metanephros
1
microglial cell
1
myoepithelial cell
1
naive t cell
1
neural cell
1
neuroendocrine cell
1
neuron
1
non keratinizing barrier epithelial cell
1
oligodendrocyte
1
pancreatic endocrine cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
paneth cell
1
parietal epithelial cell
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
plasma cell
1
proximal epiphysis of femur
1
proximal tubule cells with injury markers
1
regular atrial cardiac myocyte
1
respiratory goblet cell
1
retinal bipolar neuron
1
retinal pigment epithelial cell
1
skeletal muscle fibroblast
1
skin fibroblast
1
small intestine goblet cell
1
smooth muscle cell of the coronary artery
1
stomach neuroendocrine cell
1
stromal cell
1
sympathetic neuron
1
trophoblast giant cell
1
type I cell of adrenal cortex
1
type II cell of adrenal cortex
1
ureteric bud
1
uterine smooth muscle cell
1
ventricular cardiac muscle cell
Date released
2
January, 2021
1
November, 2021
Software used
2
macs
1
cicero
Lab
2
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Project
2
T1D
1
ENCODE
RFA
2
T1D
1
ENCODE3
biosample_term_name!
pancreatic delta cell
Showing 3 of 3 results
table-tab-icon
matrix-icon
Download
FileSet
DSR552LZW
released
Annotation file set
: Accessible chromatin annotation of T Lymphocyte 1 (CD8+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR813PSH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR805RPA
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D