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Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
1
gene expression
Annotation Category
3
Target gene links
1
Gene expression levels
Annotation type Category
42
ChIP-seq
11
DNase-seq
8
snATAC-seq
6
ATAC-seq
3
H3K27ac ChIP-Seq
2
RNA-seq
2
pCHi-C
1
scRNA-seq
Available data
3
bed bed3+
1
tsv
1
txt
File set status
4
released
Genome assembly (visualization)
3
hg19
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
15
CD14-positive monocyte
10
pituitary stalk
7
dendritic cell
7
pancreatic acinar cell
7
pancreatic ductal cell
6
endothelial cell
6
pancreatic beta cell
6
pancreatic delta cell
5
pancreatic alpha cell
5
pancreatic stellate cell
4
adipocyte
4
hepatocyte
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
3
CD8-positive, alpha-beta T cell
3
kidney interstitial cell
3
macrophage
3
natural killer cell
3
nephron progenitor
3
pancreatic quiescent stellate cell
2
BJAB cell
2
CD4-positive helper T cell
2
Jurkat
2
Kupffer cell
2
MCF 10A cell
2
S-shaped body
2
T-cell
2
THP-1
2
U937
2
adrenal gland
2
cardiomyocytes (cardiac muscle cell)
2
gamma-delta T cell
2
pancreatic polypeptide-secreting cell
2
renal vesicle
2
stomach
2
trophoblast cell
1
A549
1
A673
1
B cell
1
B cell, CD19-positive
1
B-1 B cell
1
B-2 B cell
1
CD56-positive, CD161-positive immature natural killer cell
1
GM12878
1
H1-hESC
1
H7-hESC
1
H9
1
HAP-1
1
HCT-116 cell
1
HT-29
1
HeLa-S3
1
HepG2
1
IMR-90
1
K562
1
KARPAS-422 cell
1
LNCAP
1
LoVo cell
1
MCF-7
1
MDA-MB-231 cell
1
MM.1S
1
NCCIT cell
1
OCI-LY7
1
PC-9
1
Panc1
1
SK-N-SH
1
Schwann cell
1
T-helper 17 cell
1
activated pancreatic stellate cell
1
adipose tissue
1
alpha-beta T cell
1
alternatively activated macrophage
1
aorta
1
aortic valve
1
astrocyte
1
beige adipocyte
1
bipolar neuron
1
body of pancreas
1
breast epithelium
1
cardiac muscle cell
1
cardiac ventricle
1
cholangiocyte
1
common myeloid progenitor, CD34-positive
1
coronary artery
1
cytotoxic T cell
1
effector CD8-positive, alpha-beta T cell
1
endothelial cell of umbilical vein
1
epithelial cell of distal tubule
1
epithelial cell of prostate
1
epithelial cell of proximal tubule
1
erythroblast
1
erythroid lineage cell
1
fibroblast of arm
1
fibroblast of dermis
1
fibroblast of lung
1
foreskin fibroblast
1
gastrocnemius medialis
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
heart
1
heart right ventricle
1
hepatic stellate cell
1
iPS DF 19.11
1
induced pluripotent stem cell
1
inflammatory macrophage
1
keratinocyte
1
kidney connecting tubule epithelial cell
1
kidney distal convoluted tubule epithelial cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
large intestine
1
left cardiac atrium
1
leukocyte
1
liver
1
mammary epithelial cell
1
mast cell
1
mature B cell
1
megakaryocyte-erythroid progenitor cell
1
mesangial cell
1
mesenchymal cell
1
mesenchymal stem cell
1
mesendoderm
1
meso-epithelial cell
1
mitral valve
1
monocyte
1
muscle of leg
1
muscle of trunk
1
myotube
1
neuronal stem cell
1
osteoblast
1
ovary
1
pancreas
1
pancreatic A cell
1
pancreatic cell
1
pancreatic epsilon cell
1
placenta
1
plasma cell
1
proximal tubule
1
psoas muscle
1
pulmonary valve
1
quiescent pancreatic stellate cell
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal connecting tubule
1
renal principal cell
1
right cardiac atrium
1
sigmoid colon
1
skeletal muscle myoblast
1
small intestine
1
smooth muscle cell of the coronary artery
1
spinal cord
1
spleen
1
thymus
1
thyroid gland
1
transverse colon
1
tricuspid valve
1
type B pancreatic cell
1
ureteric bud
1
uterus
1
white adipose tissue
Life stage
1
adult
Date released
3
May, 2021
1
August, 2021
Software used
3
abc
1
r
1
seurat
Lab
3
Jesse Engreitz, Stanford University
1
Katalin Susztak, Upenn
Project
4
AMP
RFA
3
AMP
1
AMP2
Showing 4 of 4 results
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Download
FileSet
DSR512ARP
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for CD8-positive, alpha-beta T cell
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR876RQU
released
Annotation file set
: enhancer-gene predicton of erythroblast-Corces2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR485QCY
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR886AVL
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-Corces2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP