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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
chromatin state
accessible chromatin
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
2
ChIP-seq
1
ATAC-seq
Available data
2
bed bed9
1
bed bed3+
File set status
3
released
Genome assembly (visualization)
52
hg19
3
GRCh38
Organism
3
Homo sapiens
Biosample type
2
tissue
1
primary cell
Biosample term
87
monocyte
54
HeLa-S3
38
H1-hESC
22
K562
21
heart
20
brain
20
stomach
19
HFFc6
18
A549
17
lung
17
neural progenitor cell
16
kidney
16
muscle of arm
16
small intestine
15
adrenal gland
15
muscle of leg
15
placenta
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
11
hepatocyte
11
right lung
11
thymus
10
endothelial cell of hepatic sinusoid
10
hematopoietic multipotent progenitor cell
10
pericyte cell
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
coronary artery
9
heart left ventricle
9
left kidney
9
macrophage
9
renal cortex interstitium
9
renal pelvis
9
tibial nerve
8
B cell
8
body of pancreas
8
caudate nucleus
8
liver
8
spinal cord
8
substantia nigra
8
tibial artery
7
CD8-positive, alpha-beta memory T cell
7
GM12878
7
H9
7
adipose tissue
7
ascending aorta
7
cerebellum
7
endothelial cell
7
frontal cortex
7
lymphocyte
7
putamen
7
right atrium auricular region
7
smooth muscle cell
7
spleen
6
T cell
6
fibroblast
6
iPSC derived cell line
6
left cardiac atrium
6
lymphoblastoid cell line
6
mononuclear cell
6
olfactory receptor cell
6
omental fat pad
5
Ammon's horn
5
HepG2
5
MCF-7
5
amygdala
5
anterior cingulate cortex
5
heart right ventricle
5
hypothalamus
5
nucleus accumbens
5
ovary
5
regulatory T cell
5
right lobe of liver
5
sigmoid colon
5
subcutaneous adipose tissue
5
thyroid gland
5
transverse colon
5
trophoblast cell
4
C1 segment of cervical spinal cord
4
CD14-positive monocyte
4
CyT49
4
HUES8
4
T-helper 1 cell
4
T-helper 17 cell
4
T-helper 2 cell
4
angular gyrus
4
aorta
4
cerebellum (Hemisphere)
4
chorionic villus
4
colon epithelial cell
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endocrine pancreas
4
endothelial cell of umbilical vein
4
fibroblast of cardiac tissue
4
foreskin keratinocyte
4
gastrocnemius medialis
4
gastrocnemius medialis(Muscle - Skeletal)
4
keratinocyte
4
layer of hippocampus
4
left ventricle myocardium
4
mammary gland epithelial cell
4
muscle of trunk
4
natural killer cell
4
psoas muscle
4
retina
4
skin of body
4
temporal lobe
4
testis
3
HCT116
3
Peyer's patch
3
astrocyte
3
blood cell
3
chorion membrane
3
endometrium adenocarcinoma
3
esophagus
3
esophagus muscularis mucosa
3
fibroblast of dermis
3
fibroblast of lung
3
immortal human breast epithelial cell line cell
3
islet of Langerhans
3
luminal epithelial cell of mammary gland
3
mesenchymal stem cell
3
naive T cell
3
neurosphere
3
neutrophil
3
pancreas
3
prostate gland
3
right cardiac atrium
3
skeletal muscle satellite cell
3
skeletal muscle tissue
3
skin fibroblast
3
thoracic aorta
3
upper lobe of left lung
3
vagina
2
22Rv1
2
Brodmann (1909) area 46
2
CD4-positive helper T cell
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
LNCaP clone FGC
2
NAMALWA cell
2
SK-N-DZ
2
SK-N-SH
2
T47D
2
adipocyte
2
blood vessel smooth muscle cell
2
breast epithelium
2
bronchial epithelial cell
2
cingulate gyrus
2
colonic mucosa
2
cortical cell of adrenal gland
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
duodenal mucosa
2
endodermal cell
2
enteric smooth muscle cell
2
epithelial cell of prostate
2
esophagus squamous epithelium
2
eye
2
fat cell
2
fibroblast of breast
2
fibroblast of the aortic adventitia
2
foreskin fibroblast
2
gabaergic neuron
2
germinal matrix
2
glutamatergic neuron
2
kidney tubule cell
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
lower leg skin
2
microglial cell
2
mucosa of rectum
2
muscle
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
pancreatic A cell
2
parathyroid adenoma
2
right renal cortex interstitium
2
right renal pelvis
2
skeletal muscle myoblast
2
smooth muscle cell of the esophagus
2
stomach smooth muscle
2
tongue
2
trophoblast
2
type B pancreatic cell
2
type II pneumocyte
2
urinary bladder
2
uterus
1
8988T
1
A172
1
A673
1
ACC112
1
ACHN
Disease term
2
parathyroid gland clear cell adenoma
Life stage
2
adult
Date released
2
September, 2022
1
November, 2021
Software used
2
chromhmm
1
abc
Lab
2
AMP-T2D consortium
1
Bing Ren, UCSD
Project
2
AMP
1
ENCODE
RFA
2
AMP
1
ENCODE3
annotation_type!
accessible chromatin
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR585RAO
released
Annotation file set
: Chromatin states for BSS01412 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR737CBP
released
Annotation file set
: Chromatin states for BSS01411 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR786GAR
released
Annotation file set
: Target gene predictions of T Lymphocyte 1 (CD8+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE