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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
gene expression
1
target gene predictions
Annotation Category
1
Gene expression levels
1
Target gene links
1
cis-regulatory elements
Annotation type Category
2
snATAC-seq
1
scRNA-seq
Available data
2
bed bed3+
1
bigWig
1
tsv
1
txt
File set status
3
released
Genome assembly (visualization)
2
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
31
neural progenitor cell
8
H1-hESC
8
islet of Langerhans
8
kidney
6
endothelial cell
6
liver
4
cartilage tissue
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic delta cell
3
CD8-positive, alpha-beta T cell
3
hepatocyte
3
macrophage
3
natural killer cell
3
subcutaneous adipose tissue
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
adipose tissue
2
blood
2
conventional dendritic cell
2
kidney distal convoluted tubule epithelial cell
2
megakaryocyte
2
memory B cell
2
monocyte
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell mediated cytotoxicity
2
non-classical monocyte
2
pancreatic acinar cell
2
pancreatic ductal cell
2
pancreatic polypeptide-secreting cell
2
pancreatic stellate cell
2
plasmacytoid dendritic cell
2
regulatory T cell
2
renal principal cell
2
stellate neuron
1
B-1 B cell
1
B-2 B cell
1
HepG2
1
T-helper 17 cell
1
alternatively activated macrophage
1
aorta
1
aortic valve
1
cerebrospinal fluid
1
dendritic cell
1
effector CD8-positive, alpha-beta T cell
1
epithelial cell of proximal tubule
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
heart
1
heart right ventricle
1
inflammatory macrophage
1
kidney connecting tubule epithelial cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
left cardiac atrium
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mitral valve
1
omental fat pad
1
progenitor cell
1
proximal tubule cells with injury markers
1
pulmonary valve
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal intercalated cell
1
right cardiac atrium
1
skeletal muscle tissue
1
synovial joint
1
tricuspid valve
Life stage
1
adult
Date released
35
May, 2021
12
September, 2022
11
February, 2021
3
May, 2020
2
January, 2021
2
June, 2020
2
November, 2021
1
August, 2021
1
January, 2022
1
May, 2022
Software used
1
cicero
1
macs
1
r
1
seurat
Lab
2
Kyle Gaulton, UCSD
1
Katalin Susztak, Upenn
Project
2
T1D
1
AMP
RFA
2
T1D
1
AMP2
Showing 3 of 3 results
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Download
FileSet
DSR512ARP
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for CD8-positive, alpha-beta T cell
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR813PSH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR805RPA
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D