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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
accessible chromatin
3
gene expression
Annotation Category
4
cis-regulatory elements
3
Gene expression levels
Annotation type Category
2
ATAC-seq
2
RNA-seq
2
snATAC-seq
1
scRNA-seq
Available data
47
bed bed3+
4
bigWig
3
tsv
1
bed bed9+
1
txt
File set status
7
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
7
primary cell
Biosample term
31
monocyte
23
endothelial cell
18
retina
17
kidney
16
epithelial cell of proximal tubule
16
hepatocyte
16
islet of Langerhans
15
pancreatic ductal cell
14
excitatory neuron
14
fibroblast
14
glomerular endothelial cell
14
pancreatic beta cell
13
macrophage
13
pancreatic alpha cell
13
pigmented layer of retina
12
pancreatic acinar cell
12
subcutaneous adipose tissue
11
cardiomyocytes
11
pancreatic delta cell
10
EndoC_BH1
10
pericyte cell
10
regulatory T cell
9
T-helper 1 cell
9
T-helper 17 cell
9
astrocyte
9
coronary artery
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
progenitor cell of endocrine pancreas
8
B cell
8
H1-hESC
8
omental fat pad
8
pancreatic stellate cell
8
right atrium auricular region
8
smooth muscle cell
8
tibial nerve
7
CD8-positive, alpha-beta T cell
7
cerebellum
7
frontal cortex
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
memory B cell
7
neural progenitor cell
7
tibial artery
6
Ammon's horn
6
ascending aorta
6
body of pancreas
6
caudate nucleus
6
endothelial cell of hepatic sinusoid
6
gamma-delta T cell
6
glomerular visceral epithelial cell
6
heart
6
mesangial cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
putamen
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T cell
5
T-helper 2 cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
amygdala
5
anterior cingulate cortex
5
central memory CD8-positive, alpha-beta T cell
5
cerebellum (Hemisphere)
5
effector memory CD8-positive, alpha-beta T cell
5
erythroblast
5
gastrocnemius medialis(Muscle - Skeletal)
5
hypothalamus
5
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
left ventricle myocardium
5
natural killer cell
5
nucleus accumbens
5
osteoblast
5
pancreatic endothelial cell
5
right lobe of liver
5
substantia nigra
4
T follicular helper cell
4
adipose tissue
4
bone tissue
4
cardiac precursors (cardiac muscle cell)
4
cardiomyocytes (cardiac muscle cell)
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
heart left ventricle
4
kidney connecting tubule epithelial cell
4
liver
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
naive B cell
4
nephron progenitor
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
pancreatic polypeptide-secreting cell
4
retinal pigment epithelial cell
4
skeletal muscle satellite cell
4
type II pneumocyte
3
cardiac fibroblast
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
S-shaped body
3
adipocyte
3
adult endothelial progenitor cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
hepatic stellate cell
3
hepatocyte(AFP)
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
pancreas
3
pancreatic quiescent stellate cell
3
plasma cell
3
skeletal muscle fiber
3
type I pneumocyte
3
visceral abdominal adipose tissue
2
Kupffer cell
2
Muller cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SGBS preadipocytes
2
Schwann cell
2
aortic endothelial cell
2
articular chondrocyte
2
basal cell
2
blood vessel smooth muscle cell
2
brain
2
capillary endothelial cell
2
cardiac muscle cell
2
cholangiocyte
2
ciliated cell
2
club cell
2
endocardial cell
2
enteric neuron
2
enteric smooth muscle cell
Life stage
1
adult
Date released
2
May, 2020
2
May, 2021
1
August, 2021
1
January, 2021
1
November, 2021
Software used
3
r
2
macs
1
seurat
Lab
4
AMP-T2D consortium
1
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Kyle Gaulton, UCSD
Project
5
AMP
1
ENCODE
1
T1D
RFA
4
AMP
1
AMP2
1
ENCODE3
1
T1D
biosample_term_name!
smooth muscle cell of the esophagus
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR552LZW
released
Annotation file set
: Accessible chromatin annotation of T Lymphocyte 1 (CD8+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR072FLD
released
Annotation file set
: GSE118165 gene expression annotation of normal CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579KZW
released
Annotation file set
: GSE118165 gene expression annotation of LPS-stimulated CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR512ARP
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for CD8-positive, alpha-beta T cell
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR805RPA
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR590HEP
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of normal CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR935PWD
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of LPS-stimulated CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP