Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
5
target gene predictions
2
gene expression
Annotation Category
cis-regulatory elements
5
Target gene links
2
Gene expression levels
Annotation type Category
3
ATAC-seq
2
DNase-seq
2
H3K27ac ChIP-Seq
2
RNA-seq
1
pCHi-C
1
snATAC-seq
Available data
5
bed bed3+
2
tsv
File set status
7
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
7
primary cell
Biosample term
52
HeLa-S3
47
H1-hESC
23
heart
21
kidney
20
brain
20
islet of Langerhans
19
HFFc6
17
K562
17
induced pluripotent stem cell
17
lung
17
muscle of arm
17
stomach
16
CD14-positive monocyte
16
placenta
16
small intestine
15
endothelial cell
15
macrophage
14
large intestine
14
muscle of leg
14
thymus
13
EndoC_BH1
13
left lung
muscle of back
13
smooth muscle cell
12
adrenal gland
12
fibroblast
12
neural progenitor cell
12
pancreatic ductal cell
11
cardiomyocytes
11
right kidney
11
right lung
10
liver
10
pericyte cell
10
pituitary stalk
10
renal cortex interstitium
10
renal pelvis
9
extended pluripotent stem (EPS) cells
9
left kidney
9
pancreatic acinar cell
9
progenitor cell of endocrine pancreas
9
spinal cord
8
H9
8
monocyte
8
pancreatic delta cell
7
CD8-positive, alpha-beta T cell
7
GM12878
7
T-helper 17 cell
7
adipocyte
7
lymphocyte
7
pancreatic alpha cell
7
pancreatic beta cell
7
trophoblast cell
6
B cell
6
CD4-positive, alpha-beta memory T cell
6
cardiac precursors (cardiac muscle cell)
6
cardiomyocytes (cardiac muscle cell)
6
dendritic cell
6
heart left ventricle
6
hepatocyte
6
iPSC derived cell line
6
keratinocyte
6
lymphoblastoid cell line
6
mesenchymal stem cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
olfactory receptor cell
6
pancreatic stellate cell
6
regulatory T cell
5
T cell
5
T-helper 1 cell
5
T-helper 2 cell
5
adipose tissue
5
astrocyte
5
coronary artery
5
endothelial cell of umbilical vein
5
heart right ventricle
5
memory B cell
5
muscle of trunk
5
spleen
4
CD4-positive helper T cell
4
CyT49
4
HUES8
4
cardiac muscle cell
4
chorionic villus
4
colon epithelial cell
4
common myeloid progenitor, CD34-positive
4
foreskin keratinocyte
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
nephron progenitor
4
neutrophil
4
ovary
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
psoas muscle
4
retina
4
skeletal muscle fiber
4
skin of body
4
type I muscle cell
4
type II muscle cell
3
CD4-positive, alpha-beta T cell
3
HepG2
3
S-shaped body
3
SK-N-SH
3
T follicular helper cell
3
activated CD4-positive, alpha-beta T cell
3
basal cell
3
blood cell
3
central memory CD8-positive, alpha-beta T cell
3
chorion membrane
3
cortical cell of adrenal gland
3
effector memory CD8-positive, alpha-beta T cell
3
enterocyte
3
epithelial cell of esophagus
3
epithelial cell of prostate
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
fibroblast of lung
3
foreskin fibroblast
3
frontal cortex
3
glomerular endothelial cell
3
glomerular visceral epithelial cell
3
hepatocyte(AFP)
3
kidney epithelial cell
3
kidney interstitial cell
3
left cardiac atrium
3
left renal cortex interstitium
3
left renal pelvis
3
mammary gland epithelial cell
3
mesendoderm
3
myofibroblast cell
3
naive B cel
3
naive B cell
3
natural killer cell
3
neurosphere
3
osteoblast
3
pancreas
3
pancreatic A cell
3
pancreatic quiescent stellate cell
3
right atrium auricular region
3
right renal cortex interstitium
3
right renal pelvis
3
sigmoid colon
3
skeletal muscle myoblast
3
skeletal muscle tissue
3
skin fibroblast
3
tibial artery
3
trophoblast
3
type B pancreatic cell
3
type II pneumocyte
2
muscle of leg
2
22Rv1
2
A673
2
BJAB cell
2
CD8-positive, alpha-beta memory T cell
2
GM18507
2
H7-hESC
2
HCT116
2
IMR-90
2
Jurkat
2
MCF 10A cell
2
MIN6
2
NAMALWA cell
2
PC-9
2
Panc1
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SK-N-DZ
2
Schwann cell
2
T-cell
2
THP-1
2
U937
2
activated CD8-positive, alpha-beta T cell
2
aorta
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
blood vessel smooth muscle cell
2
body of pancreas
2
bronchial epithelial cell
2
cerebellum
2
choroid plexus epithelial cell
2
dermis lymphatic vessel endothelial cell
2
dorsolateral prefrontal cortex
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
embryonic stem cell
2
endodermal cell
2
enteric smooth muscle cell
2
epithelial cell of proximal tubule
2
erythroblast
2
esophagus
2
eye
2
fat cell
2
fibroblast of the aortic adventitia
2
gabaergic neuron
2
gamma-delta T cell
2
glutamatergic neuron
2
goblet cell
Life stage
adult
Date released
4
May, 2021
1
January, 2021
1
May, 2020
1
November, 2021
Software used
3
abc
2
r
1
chicago
1
cicero
Lab
3
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
1
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Project
5
AMP
1
ENCODE
1
T1D
RFA
5
AMP
1
ENCODE3
1
T1D
relevant_life_stage!
adult
biosample_term_name!
muscle of back
annotation_category!
cis-regulatory elements
Showing 7 of 7 results
table-tab-icon
matrix-icon
Download
FileSet
DSR786GAR
released
Annotation file set
: Target gene predictions of T Lymphocyte 1 (CD8+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR072FLD
released
Annotation file set
: GSE118165 gene expression annotation of normal CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579KZW
released
Annotation file set
: GSE118165 gene expression annotation of LPS-stimulated CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR485QCY
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR886AVL
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-Corces2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR813PSH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR603PAJ
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP