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Schema
Citing CMDGA
Clear Filters
Annotation type
3
gene expression
2
target gene predictions
Annotation Category
cis-regulatory elements
3
Gene expression levels
2
Target gene links
Annotation type Category
2
RNA-seq
1
pCHi-C
1
scRNA-seq
1
snATAC-seq
Available data
3
tsv
2
bed bed3+
1
txt
File set status
5
released
Genome assembly (visualization)
2
hg19
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
54
HeLa-S3
46
H1-hESC
32
islet of Langerhans
25
heart
25
monocyte
23
kidney
22
K562
21
stomach
20
brain
19
HFFc6
19
liver
19
lung
18
A549
18
epithelial cell of proximal tubule
17
adrenal gland
17
hepatocyte
17
muscle of arm
17
small intestine
16
endothelial cell
16
glomerular endothelial cell
16
induced pluripotent stem cell
16
subcutaneous adipose tissue
15
adipose tissue
15
macrophage
15
placenta
13
EndoC_BH1
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
13
muscle of leg
13
regulatory T cell
13
thymus
12
neural progenitor cell
12
tibial nerve
11
B cell
11
T-helper 1 cell
11
T-helper 17 cell
11
body of pancreas
11
cardiomyocytes
11
coronary artery
11
heart left ventricle
11
hematopoietic multipotent progenitor cell
11
pancreatic ductal cell
11
right atrium auricular region
11
right kidney
11
right lung
10
caudate nucleus
10
frontal cortex
10
pancreatic alpha cell
10
pancreatic beta cell
10
pancreatic delta cell
10
renal cortex interstitium
10
renal pelvis
10
tibial artery
9
CD4-positive, alpha-beta memory T cell
9
cerebellum
9
extended pluripotent stem (EPS) cells
9
left kidney
9
naive thymus-derived CD4-positive, alpha-beta T cell
9
neutrophil
9
omental fat pad
9
progenitor cell of endocrine pancreas
9
putamen
9
spleen
9
substantia nigra
8
T cell
8
ascending aorta
8
cardiomyocytes (cardiac muscle cell)
8
fibroblast
8
pancreatic acinar cell
8
spinal cord
7
Ammon's horn
7
CD8-positive, alpha-beta memory T cell
7
GM12878
7
H9
7
T-helper 2 cell
7
glomerular visceral epithelial cell
7
heart right ventricle
7
kidney loop of Henle thin ascending limb epithelial cell
7
lymphocyte
7
natural killer cell
7
ovary
7
psoas muscle
smooth muscle cell
6
amygdala
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
hypothalamus
6
iPSC derived cell line
6
kidney interstitial cell
6
lymphoblastoid cell line
6
mesenchymal stem cell
6
mononuclear cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
nucleus accumbens
6
olfactory receptor cell
6
pancreas
6
pancreatic stellate cell
6
retina
6
right lobe of liver
6
sigmoid colon
6
skeletal muscle tissue
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD8-positive, alpha-beta T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
MCF-7
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
adipocyte
5
aorta
5
gastrocnemius medialis(Muscle - Skeletal)
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
left ventricle myocardium
5
mesangial cell
5
testis
5
thyroid gland
5
transverse colon
5
trophoblast cell
4
CD14-positive monocyte
4
CyT49
4
HUES8
4
adult endothelial progenitor cell
4
bone tissue
4
cartilage tissue
4
chorionic villus
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endocrine pancreas
4
endothelial cell of hepatic sinusoid
4
endothelial cell of umbilical vein
4
esophagus
4
foreskin keratinocyte
4
gamma-delta T cell
4
gastrocnemius medialis
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
layer of hippocampus
4
mammary gland epithelial cell
4
memory B cell
4
muscle of trunk
4
nephron progenitor
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
Life stage
1
adult
Date released
2
May, 2021
1
August, 2021
1
January, 2021
1
May, 2020
Software used
abc
3
r
1
chicago
1
cicero
1
seurat
Lab
3
AMP-T2D consortium
1
Katalin Susztak, Upenn
1
Kyle Gaulton, UCSD
Project
4
AMP
1
T1D
RFA
3
AMP
1
AMP2
1
T1D
software_used.software.name!
abc
biosample_term_name!
smooth muscle cell
annotation_category!
cis-regulatory elements
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR072FLD
released
Annotation file set
: GSE118165 gene expression annotation of normal CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579KZW
released
Annotation file set
: GSE118165 gene expression annotation of LPS-stimulated CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR512ARP
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for CD8-positive, alpha-beta T cell
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR813PSH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR603PAJ
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP