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Schema
Citing CMDGA
Clear Filters
Annotation type
5
target gene predictions
2
gene expression
Annotation Category
cis-regulatory elements
5
Target gene links
2
Gene expression levels
Annotation type Category
3
ATAC-seq
2
DNase-seq
2
H3K27ac ChIP-Seq
2
RNA-seq
1
pCHi-C
1
snATAC-seq
Available data
5
bed bed3+
2
tsv
File set status
7
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
7
primary cell
Biosample term
55
HeLa-S3
47
H1-hESC
32
islet of Langerhans
26
monocyte
25
heart
23
K562
23
kidney
23
stomach
20
brain
20
liver
19
A549
19
CD14-positive monocyte
19
HFFc6
19
adrenal gland
19
endothelial cell
19
hepatocyte
19
lung
18
small intestine
17
epithelial cell of proximal tubule
17
induced pluripotent stem cell
17
muscle of arm
16
adipose tissue
16
macrophage
16
placenta
16
subcutaneous adipose tissue
15
glomerular endothelial cell
14
common myeloid progenitor, CD34-positive
14
large intestine
14
muscle of leg
14
thymus
13
EndoC_BH1
13
left lung
13
muscle of back
13
pancreatic ductal cell
13
regulatory T cell
13
smooth muscle cell
12
B cell
12
body of pancreas
12
coronary artery
12
fibroblast
12
neural progenitor cell
12
tibial nerve
11
T-helper 1 cell
11
cardiomyocytes
11
heart left ventricle
11
hematopoietic multipotent progenitor cell
11
pancreatic delta cell
11
right atrium auricular region
11
right kidney
11
right lung
10
T-helper 17 cell
10
caudate nucleus
10
frontal cortex
10
pancreatic acinar cell
10
pancreatic alpha cell
10
pancreatic beta cell
10
pericyte cell
10
pituitary stalk
10
renal cortex interstitium
10
renal pelvis
10
spleen
10
tibial artery
9
CD4-positive, alpha-beta memory T cell
9
adipocyte
9
cerebellum
9
extended pluripotent stem (EPS) cells
9
left kidney
9
naive thymus-derived CD4-positive, alpha-beta T cell
9
neutrophil
9
omental fat pad
9
progenitor cell of endocrine pancreas
9
putamen
9
spinal cord
9
substantia nigra
8
GM12878
8
H9
8
T cell
8
ascending aorta
8
cardiomyocytes (cardiac muscle cell)
8
ovary
8
psoas muscle
7
Ammon's horn
7
CD8-positive, alpha-beta T cell
7
CD8-positive, alpha-beta memory T cell
7
T-helper 2 cell
7
glomerular visceral epithelial cell
7
heart right ventricle
7
kidney loop of Henle thin ascending limb epithelial cell
7
lymphocyte
7
mesenchymal stem cell
7
natural killer cell
7
pancreas
7
sigmoid colon
7
trophoblast cell
6
MCF-7
6
amygdala
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
dendritic cell
6
hypothalamus
6
iPSC derived cell line
6
keratinocyte
6
kidney interstitial cell
6
lymphoblastoid cell line
6
mononuclear cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
nucleus accumbens
6
olfactory receptor cell
6
pancreatic stellate cell
6
retina
6
right lobe of liver
6
skeletal muscle tissue
6
thyroid gland
6
transverse colon
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
aorta
5
astrocyte
5
endothelial cell of umbilical vein
5
gastrocnemius medialis
5
gastrocnemius medialis(Muscle - Skeletal)
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
left ventricle myocardium
5
mammary gland epithelial cell
5
memory B cell
5
mesangial cell
5
muscle of trunk
5
skeletal muscle myoblast
5
testis
4
CD4-positive helper T cell
4
CyT49
4
HUES8
4
adult endothelial progenitor cell
4
bone tissue
4
cardiac muscle cell
4
cartilage tissue
4
chorionic villus
4
colon epithelial cell
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endocrine pancreas
4
endothelial cell of hepatic sinusoid
4
esophagus
4
fibroblast of cardiac tissue
4
fibroblast of dermis
Date released
4
May, 2021
1
January, 2021
1
May, 2020
1
November, 2021
Software used
3
abc
3
r
1
chicago
1
cicero
seurat
Lab
3
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
1
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Project
5
AMP
1
ENCODE
1
T1D
RFA
5
AMP
1
ENCODE3
1
T1D
software_used.software.name!
seurat
annotation_category!
cis-regulatory elements
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR786GAR
released
Annotation file set
: Target gene predictions of T Lymphocyte 1 (CD8+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR072FLD
released
Annotation file set
: GSE118165 gene expression annotation of normal CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579KZW
released
Annotation file set
: GSE118165 gene expression annotation of LPS-stimulated CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR485QCY
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR886AVL
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-Corces2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR813PSH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR603PAJ
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP