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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
9
accessible chromatin
8
gene expression
3
differential activity
2
binding sites
2
histone modifications
2
target gene predictions
1
variant allelic effects
Annotation Category
2
Target gene links
2
cis-regulatory elements
Annotation type Category
2
ChIP-seq
1
ATAC-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
1
HiC
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
4
cell line
Biosample term
56
HeLa-S3
41
H1-hESC
25
K562
21
A549
21
heart
21
stomach
19
HFFc6
18
CD14-positive monocyte
17
adrenal gland
17
brain
17
lung
17
small intestine
16
muscle of arm
16
placenta
15
kidney
15
thymus
14
large intestine
14
muscle of leg
13
left lung
13
muscle of back
11
common myeloid progenitor, CD34-positive
11
liver
11
right lung
10
GM12878
10
hematopoietic multipotent progenitor cell
10
pituitary stalk
10
right kidney
10
spinal cord
9
MCF-7
9
adipose tissue
9
breast cancer cell
9
endothelial cell
9
left kidney
9
neural progenitor cell
9
pericyte cell
9
renal cortex interstitium
9
renal pelvis
9
spleen
8
B cell
8
H9
8
psoas muscle
7
fibroblast cell line
7
foreskin fibroblast
7
heart left ventricle
7
keratinocyte
7
lymphocyte
7
melanoma
7
sigmoid colon
7
smooth muscle cell
7
trophoblast cell
6
HepG2
6
adipocyte
6
dendritic cell
6
endothelial cell of hepatic sinusoid
6
endothelial cell of umbilical vein
6
fibroblast
6
mononuclear cell
6
olfactory receptor cell
6
ovary
6
pancreas
5
CD8-positive, alpha-beta T cell
5
CD8-positive, alpha-beta memory T cell
5
HUES8
5
body of pancreas
5
cardiac muscle cell
5
foreskin keratinocyte
5
gastrocnemius medialis
5
heart right ventricle
5
iPSC derived cell line
5
macrophage
5
mammary epithelial cell
5
mammary gland epithelial cell
5
mesenchymal stem cell
5
muscle of trunk
5
natural killer cell
5
pancreatic ductal cell
5
prostate cancer cell line
5
thyroid gland
5
transverse colon
4
CyT49
4
GM19238
4
GM19239
4
GM19240
4
IMR-90
4
Jurkat
4
SK-N-SH
4
aorta
4
chorionic villus
4
embryonic stem cell
4
erythroblast
4
fibroblast of cardiac tissue
4
fibroblast of lung
4
glioblastoma multiforme cancer stem cell
4
hepatocyte
4
layer of hippocampus
4
mesendoderm
4
monocyte
4
neuroblastoma cell
4
neuronal stem cell
4
osteoblast
4
pancreatic delta cell
4
prostate gland
4
regulatory T cell
4
retina
4
skeletal muscle myoblast
4
skin fibroblast
4
testis
4
trophoblast
4
upper lobe of left lung
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
BE(2)-C
3
BJ cell
3
BJAB cell
3
CD4-positive, alpha-beta T cell
3
CD4-positive, alpha-beta memory T cell
3
Caco-2 cell
3
GM08714
3
GM12875
3
GM18505
3
GM19099
3
GM19193
3
HAP-1
3
HCT-116 cell
3
HCT116
3
HEK293
3
HL-60
3
HT-29
3
KARPAS-422 cell
3
LoVo cell
3
MCF 10A cell
3
MM.1S
3
NAMALWA cell
3
OCI-LY7
3
Peyer's patch
3
SK-N-MC
3
T cell
3
T-cell acute lymphoblastic leukemia
3
THP-1
3
Tumor-derived cell line
3
U937
3
WERI-Rb-1
3
acute myeloid leukemia
3
astrocyte
3
breast epithelium
3
cardiomyocytes (cardiac muscle cell)
3
caudate nucleus
3
colon epithelial cell
3
coronary artery
3
dermal fibroblast
3
diffuse intrinsic pontine glioma
3
endocrine pancreas
3
endodermal cell
3
endometrium adenocarcinoma
3
esophagus
3
fibroblast of dermis
3
immortal human breast epithelial cell line cell
3
islet of Langerhans
3
liposarcoma
3
luminal epithelial cell of mammary gland
3
myotube
3
neurosphere
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
synovial sarcoma cell
3
tibial nerve
3
triple-negative breast cancer
3
type B pancreatic cell
2
A673
2
Ammon's horn
2
B-lymphoblastoid cell line
2
Brodmann (1909) area 46
2
Burkitt's lymphoma
2
CD4-positive helper T cell
2
CMK
2
COLO-320 cell
2
DND-41 cell
2
Daoy
2
ECC-1
2
EndoC_BH1
2
Ewing sarcoma
2
Fallopian Tube Carcinoma
2
GM06990
2
GM10248
2
GM10266
2
GM10847
2
GM12801
2
GM12864
2
GM12865
2
GM12872
2
GM12873
2
GM12874
2
GM12891
2
GM12892
2
GM15510
Organ
2
lung
1
epithelium
1
pancreas
Life stage
unknown
Date released
2
February, 2021
1
March, 2020
1
May, 2021
Software used
2
macs
1
abc
1
hiccups
Lab
3
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
4
AMP
RFA
4
AMP
relevant_life_stage!
unknown
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR170VOW
released
Annotation file set
: Binding sites annotation for Pancreas EndoC-BH1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR997DEX
released
Annotation file set
: Binding sites annotation for Lung PC-9 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR988JBC
released
Annotation file set
: enhancer-gene predicton of PC-9-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR373FUA
released
Annotation file set
: A target gene prediction annotation in EndoC_BH1 of DSR433ZII Hi-C
Lab:
AMP-T2D consortium
Project:
AMP