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Schema
Citing CMDGA
Clear Filters
Annotation type
14
accessible chromatin
10
gene expression
6
differential activity
3
target gene predictions
1
binding sites
1
histone modifications
1
variant allelic effects
Annotation Category
3
Target gene links
1
cis-regulatory elements
Annotation type Category
2
snATAC-seq
1
ChIP-seq
1
HiC
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
2
cell line
2
primary cell
Biosample term
53
HeLa-S3
41
H1-hESC
20
heart
19
HFFc6
19
K562
17
brain
16
CD14-positive monocyte
16
lung
16
muscle of arm
16
placenta
16
stomach
15
small intestine
15
thymus
14
large intestine
14
muscle of leg
13
kidney
13
left lung
13
muscle of back
11
adrenal gland
11
right lung
10
pericyte cell
10
pituitary stalk
10
right kidney
10
spinal cord
9
GM12878
9
breast cancer cell
9
endothelial cell
9
keratinocyte
9
left kidney
9
neural progenitor cell
9
renal cortex interstitium
9
renal pelvis
8
H9
7
fibroblast cell line
7
foreskin fibroblast
7
lymphocyte
7
melanoma
7
smooth muscle cell
7
trophoblast cell
6
CD4-positive, alpha-beta memory T cell
6
HepG2
6
adipocyte
6
dendritic cell
6
endothelial cell of umbilical vein
6
fibroblast
6
olfactory receptor cell
5
CD8-positive, alpha-beta T cell
5
HUES8
5
cardiac muscle cell
5
fibroblast of lung
5
foreskin keratinocyte
5
hepatocyte
5
iPSC derived cell line
5
liver
5
macrophage
5
mammary epithelial cell
5
muscle of trunk
5
osteoblast
5
pancreatic ductal cell
5
prostate cancer cell line
5
spleen
4
B cell
4
CyT49
4
IMR-90
4
Jurkat
4
MCF-7
4
SK-N-SH
4
astrocyte
4
bronchial epithelial cell
4
chorionic villus
4
colon epithelial cell
4
common myeloid progenitor, CD34-positive
4
embryonic stem cell
4
epithelial cell of prostate
4
erythroblast
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
glioblastoma multiforme cancer stem cell
4
heart left ventricle
4
mammary gland epithelial cell
4
mesenchymal stem cell
4
mesendoderm
4
monocyte
4
neuroblastoma cell
4
neuronal stem cell
4
psoas muscle
4
retina
4
skeletal muscle myoblast
4
skin fibroblast
4
trophoblast
3
22Rv1
3
A549
3
AG04449 cell
3
AG04450 cell
3
BE(2)-C
3
BJ cell
3
BJAB cell
3
CD4-positive, alpha-beta T cell
3
GM06990
3
GM08714
3
GM12864
3
GM12865
3
GM12891
3
GM12892
3
GM18505
3
GM19099
3
GM19193
3
GM19238
3
GM19239
3
GM19240
3
HCT-116 cell
3
HEK293
3
MCF 10A cell
3
NAMALWA cell
3
NT2-D1 cell
3
PC-9
3
SK-N-MC
3
T-cell acute lymphoblastic leukemia
3
T-helper 17 cell
3
THP-1
3
Tumor-derived cell line
3
U937
3
WERI-Rb-1
3
acute myeloid leukemia
3
adipose tissue
3
chorion membrane
3
choroid plexus epithelial cell
3
dermal fibroblast
3
dermis lymphatic vessel endothelial cell
3
diffuse intrinsic pontine glioma
3
endodermal cell
3
fibroblast of mammary gland
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
heart right ventricle
3
liposarcoma
3
myotube
3
neurosphere
3
neutrophil
3
ovary
3
pancreas
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic delta cell
3
regulatory T cell
3
retinal pigment epithelial cell
3
sigmoid colon
3
synovial sarcoma cell
3
triple-negative breast cancer
3
type B pancreatic cell
2
A673
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
B-lymphoblastoid cell line
2
Burkitt's lymphoma
2
CD1c-positive myeloid dendritic cell
2
CD4-positive helper T cell
2
CD8-positive, alpha-beta memory T cell
2
CMK
2
COLO-320 cell
2
Caco-2 cell
2
DND-41 cell
2
Daoy
2
ECC-1
2
EndoC_BH1
2
Ewing sarcoma
2
Fallopian Tube Carcinoma
2
GM10847
2
GM12801
2
GM12872
2
GM12873
2
GM12874
2
GM12875
2
GM15510
2
GM18507
2
GM18526
2
GM18951
2
H7-hESC
2
HAC cell
2
HAP-1
2
HBMEC cell
2
HCT116
2
HEK293-T-REx cell
2
HK-2 cell
2
HL-60
2
HS-SY-2 cell
2
HT-29
2
HUES6
2
HUES64
2
KARPAS-422 cell
2
LNCAP
2
LoVo cell
2
MDA-MB-231 cell
2
MG63
2
MM.1S
2
Mantle cell lymphoma
2
NCCIT cell
2
NCI-H460 cell
2
NHEK
Organ
3
epithelium
3
pancreas
Life stage
adult
Date released
2
January, 2021
1
February, 2021
1
March, 2020
Software used
2
cicero
1
hiccups
1
macs
Lab
2
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Project
2
AMP
2
T1D
RFA
2
AMP
2
T1D
relevant_life_stage!
adult
Showing 4 of 4 results
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Download
FileSet
DSR170VOW
released
Annotation file set
: Binding sites annotation for Pancreas EndoC-BH1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR166ECC
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of INSlow_beta
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR131NAF
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of INShigh_beta
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR373FUA
released
Annotation file set
: A target gene prediction annotation in EndoC_BH1 of DSR433ZII Hi-C
Lab:
AMP-T2D consortium
Project:
AMP