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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
9
accessible chromatin
8
gene expression
3
binding sites
3
differential activity
3
histone modifications
1
target gene predictions
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
1
HiC
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
3
cell line
1
primary cell
Biosample term
89
monocyte
55
HeLa-S3
40
H1-hESC
35
CD8-positive, alpha-beta T cell
24
K562
22
stomach
21
heart
21
neural progenitor cell
20
A549
19
HFFc6
19
brain
18
CD14-positive monocyte
17
adrenal gland
17
lung
17
placenta
17
small intestine
16
kidney
16
muscle of arm
15
large intestine
15
thymus
14
muscle of leg
13
left lung
13
muscle of back
12
liver
11
breast cancer cell
11
common myeloid progenitor, CD34-positive
11
right lung
10
B cell
10
hematopoietic multipotent progenitor cell
10
pituitary stalk
10
right kidney
9
GM12878
9
gastric cancer cell
9
left kidney
9
pericyte cell
9
renal cortex interstitium
9
renal pelvis
9
spinal cord
8
H9
8
HepG2
8
MCF-7
8
Rhabdomyosarcoma
8
adipose tissue
8
endothelial cell
8
heart left ventricle
8
lymphocyte
8
neuroblastoma cell
8
psoas muscle
8
spleen
7
B-lymphoblastoid cell line
7
diffuse intrinsic pontine glioma
7
esophageal adenocarcinoma
7
hepatocyte
7
natural killer cell
7
sigmoid colon
7
smooth muscle cell
7
trophoblast cell
6
Chondroid Chordoma
6
adipocyte
6
dendritic cell
6
fibroblast
6
hESC cell
6
keratinocyte
6
liposarcoma
6
neuroblastoma cell line
6
olfactory receptor cell
6
ovary
6
pancreas
6
squamous cell lung carcinoma
5
CD8-positive, alpha-beta memory T cell
5
CyT49
5
T-cell acute lymphoblastic leukemia
5
body of pancreas
5
fibroblast of cardiac tissue
5
foreskin fibroblast
5
foreskin keratinocyte
5
gastrocnemius medialis
5
heart right ventricle
5
macrophage
5
melanoma cell
5
mesenchymal stem cell
5
mononuclear cell
5
muscle of trunk
5
osteosarcoma
5
pancreatic ductal cell
4
HUES8
4
Jurkat
4
T cell
4
aorta
4
astrocyte
4
cardiac muscle cell
4
caudate nucleus
4
chorionic villus
4
endothelial cell of umbilical vein
4
iPSC derived cell line
4
layer of hippocampus
4
mammary epithelial cell
4
mammary gland epithelial cell
4
mesendoderm
4
neuronal stem cell
4
pancreatic acinar cell
4
pancreatic delta cell
4
prostate gland
4
regulatory T cell
4
retina
4
rhabdomyosarcoma cell
4
skin fibroblast
4
testis
4
thyroid gland
4
transverse colon
3
CD4-positive helper T cell
3
CD4-positive, alpha-beta T cell
3
CD4-positive, alpha-beta memory T cell
3
Ewing sarcoma
3
GM18507
3
GM19238
3
GM19239
3
GM19240
3
H7-hESC
3
HAP-1
3
HCT116
3
HT-29
3
IMR-90
3
KARPAS-422 cell
3
LoVo cell
3
MM.1S
3
NAMALWA cell
3
OCI-LY7
3
Peyer's patch
3
SK-N-DZ
3
SK-N-SH
3
U937
3
acute myeloid leukemia
3
breast epithelium
3
cardiomyocytes (cardiac muscle cell)
3
cerebellum
3
colon epithelial cell
3
colonic mucosa
3
coronary artery
3
diffuse large B-cell lymphoma
3
embryonic stem cell
3
endocrine pancreas
3
endodermal cell
3
endometrium adenocarcinoma
3
esophageal squamous cell carcinoma
3
esophagus
3
glioblastoma cell
3
glioma cell
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
luminal epithelial cell of mammary gland
3
lymphoblast
3
lymphoblastoid cell line
3
neurosphere
3
osteoblast
3
pancreatic A cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic ductal adenocarcinoma
3
skeletal muscle myoblast
3
skeletal muscle tissue
3
substantia nigra
3
upper lobe of left lung
2
A673
2
AG04449 cell
2
AG04450 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
Ammon's horn
2
B-lymphocyte
2
BE(2)-C
2
BJ cell
2
BJAB cell
2
Brodmann (1909) area 46
2
CMK
2
COLO205
2
Caco-2 cell
2
EndoC_BH1
2
GM12875
2
GM18505
2
GM19099
2
GM19193
2
GM23248
2
HCT-116 cell
2
HEK293
2
HL-60
2
HS-SY-2 cell
2
HuH-7
2
LHCN-M2
2
LNCAP
2
LNCaP clone FGC
2
MCF 10A cell
2
MDA-MB-231 cell
2
MG63
2
Mantle cell lymphoma
2
NCCIT cell
2
OCI-LY1
2
PC-3
2
PC-9
Organ
2
epithelium
1
bronchus
1
pancreas
Life stage
unknown
Date released
3
February, 2021
1
March, 2020
Software used
3
macs
1
hiccups
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
relevant_life_stage!
unknown
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR257RKK
released
Annotation file set
: Histone modifications annotation for Pancreas EndoC-BH1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR741SLX
released
Annotation file set
: Histone modifications annotation for Lung HBEC3-KT from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR655FKJ
released
Annotation file set
: Histone modifications annotation for Lung Bronchial_epithelial_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR373FUA
released
Annotation file set
: A target gene prediction annotation in EndoC_BH1 of DSR433ZII Hi-C
Lab:
AMP-T2D consortium
Project:
AMP