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Schema
Citing CMDGA
Clear Filters
Annotation type
13
accessible chromatin
8
gene expression
3
binding sites
3
differential activity
2
chromatin state
2
target gene predictions
1
histone modifications
1
variant allelic effects
Annotation Category
2
Target gene links
2
cis-regulatory elements
Annotation type Category
2
ChIP-seq
1
ATAC-seq
DNase-seq
1
H3K27ac ChIP-Seq
1
HiC
1
pCHi-C
Available data
2
bed bed3+
2
bed bed9+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
3
primary cell
1
cell line
Biosample term
54
HeLa-S3
39
H1-hESC
23
K562
22
heart
19
HFFc6
19
stomach
18
A549
18
brain
17
lung
16
kidney
16
muscle of arm
16
small intestine
15
adrenal gland
15
muscle of leg
14
placenta
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
13
thymus
11
liver
11
right lung
10
heart left ventricle
10
hematopoietic multipotent progenitor cell
10
pericyte cell
10
right kidney
9
B cell
9
CD4-positive, alpha-beta memory T cell
9
left kidney
9
renal cortex interstitium
9
renal pelvis
8
GM12878
7
CD8-positive, alpha-beta memory T cell
7
H9
7
adipose tissue
7
endothelial cell
7
heart right ventricle
7
lymphocyte
7
mature neutrophil
7
psoas muscle
7
smooth muscle cell
7
spinal cord
7
spleen
6
CD4-positive, alpha-beta T cell
6
adipocyte
6
aorta
6
embryonic stem cell
6
endothelial cell of umbilical vein
6
left cardiac atrium
6
mononuclear cell
6
olfactory receptor cell
6
sigmoid colon
5
CD14-positive, CD16-negative classical monocyte
5
MCF-7
5
alternatively activated macrophage
5
keratinocyte
5
neural progenitor cell
5
ovary
5
pancreas
5
temporal lobe
5
trophoblast cell
4
CD14-positive monocyte
4
CD8-positive, alpha-beta T cell
4
CyT49
4
HUES8
4
T cell
4
angular gyrus
4
body of pancreas
4
caudate nucleus
4
chorionic villus
4
colon epithelial cell
4
endocrine pancreas
4
fibroblast
4
fibroblast of cardiac tissue
4
fibroblast of lung
4
foreskin keratinocyte
4
gastrocnemius medialis
4
iPSC derived cell line
4
inflammatory macrophage
4
islet of Langerhans
4
layer of hippocampus
4
mammary gland epithelial cell
4
mesenchymal stem cell
4
muscle of trunk
4
natural killer cell
4
pancreatic delta cell
4
regulatory T cell
4
right cardiac atrium
4
thyroid gland
4
tibial nerve
4
transverse colon
3
HCT116
3
HepG2
3
Peyer's patch
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
ascending aorta
3
astrocyte
3
cardiomyocytes (cardiac muscle cell)
3
chorion membrane
3
cingulate gyrus
3
colonic mucosa
3
coronary artery
3
duodenal mucosa
3
endometrium adenocarcinoma
3
erythroblast
3
esophagus
3
fibroblast of dermis
3
hepatocyte
3
immortal human breast epithelial cell line cell
3
luminal epithelial cell of mammary gland
3
macrophage
3
mucosa of rectum
3
naive T cell
3
neurosphere
3
neutrophil
3
pancreatic alpha cell
3
pancreatic beta cell
3
retina
3
skeletal muscle myoblast
3
skeletal muscle satellite cell
3
skeletal muscle tissue
3
skin fibroblast
3
stomach smooth muscle
3
substantia nigra
3
testis
3
thoracic aorta
3
tibial artery
3
trophoblast
3
upper lobe of left lung
2
22Rv1
2
Ammon's horn
2
Brodmann (1909) area 46
2
ESC derived cell line
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
KARPAS-422 cell
2
LNCaP clone FGC
2
NAMALWA cell
2
SK-N-DZ
2
SK-N-SH
2
T47D
2
activated CD4-positive, alpha-beta T cell
2
blood vessel smooth muscle cell
2
breast epithelium
2
bronchial epithelial cell
2
cerebellum
2
cortical cell of adrenal gland
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
endodermal cell
2
enteric smooth muscle cell
2
epithelial cell of prostate
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
fibroblast of breast
2
foreskin fibroblast
2
frontal cortex
2
gabaergic neuron
2
germinal matrix
2
glutamatergic neuron
2
kidney tubule cell
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
lower leg skin
2
lymphocyte of B lineage (iPSC)
2
megakaryocyte
2
memory B cell
2
mesendoderm
2
monocyte
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
omental fat pad
2
pancreatic A cell
2
pancreatic acinar cell
2
pancreatic ductal cell
2
parathyroid adenoma
2
prostate gland
2
rectum smooth muscle tissue
2
right atrium auricular region
2
right renal cortex interstitium
2
right renal pelvis
2
smooth muscle cell of the esophagus
2
tongue
2
type B pancreatic cell
2
type II pneumocyte
2
urinary bladder
2
vagina
1
8988T
1
A172
Organ
1
epithelium
1
pancreas
Life stage
2
child
Date released
2
May, 2022
1
March, 2020
1
May, 2020
Software used
2
chromhmm
1
chicago
1
hiccups
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_type_category!
DNase-seq
Showing 4 of 4 results
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Download
FileSet
DSR855DIH
released
Annotation file set
: Chromatin state of erythroblast from BLUEPRINT ChromHmm Segmentation of ChIP-Seq data
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR640XWO
released
Annotation file set
: Chromatin state of erythroblast from BLUEPRINT ChromHmm Segmentation of ChIP-Seq data
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR617WXQ
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of erythroblast
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR373FUA
released
Annotation file set
: A target gene prediction annotation in EndoC_BH1 of DSR433ZII Hi-C
Lab:
AMP-T2D consortium
Project:
AMP