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Schema
Citing CMDGA
Clear Filters
Annotation type
8
gene expression
3
differential activity
2
accessible chromatin
1
binding sites
1
histone modifications
1
target gene predictions
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
3
ATAC-seq
1
ChIP-seq
Available data
4
bed bed3+
1
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
cell line
Biosample term
25
retina
24
fibroblast
20
endothelial cell
20
pigmented layer of retina
19
monocyte
17
macrophage
14
neural progenitor cell
13
excitatory neuron
12
endothelial cell of hepatic sinusoid
12
kidney
11
hepatocyte
11
pancreatic ductal cell
11
retinal pigment epithelial cell
11
smooth muscle cell
10
islet of Langerhans
10
pericyte cell
9
T cell
9
breast cancer cell
9
embryonic stem cell
9
pancreatic beta cell
8
B cell
8
adipocyte
8
astrocyte
8
heart
8
osteoblast
8
pancreatic acinar cell
8
pancreatic alpha cell
7
cardiac muscle cell
7
erythroblast
7
fibroblast cell line
7
keratinocyte
7
melanoma
7
pancreas
7
skeletal muscle fiber
6
SGBS preadipocytes
6
chondrocyte
6
enterocyte
6
glutamatergic neuron
6
pancreatic delta cell
6
regulatory T cell
5
cardiac fibroblast
5
CD8-positive, alpha-beta T cell
5
HepG2
5
choroid plexus epithelial cell
5
coronary artery
5
endothelial cell of umbilical vein
5
fibroblast of cardiac tissue
5
foreskin fibroblast
5
heart left ventricle
5
hepatic stellate cell
5
inhibitory neuron
5
liver
5
mammary epithelial cell
5
mammary gland epithelial cell
5
myofibroblast cell
5
prostate cancer cell line
5
right atrium auricular region
5
skeletal muscle myoblast
5
skeletal muscle satellite cell
5
tibial artery
5
tibial nerve
5
type II pneumocyte
4
EndoC_BH1
4
MCF-7
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
Rh-4 cell
4
acute myeloid leukemia
4
adipose tissue
4
basal cell
4
brain
4
cortical cell of adrenal gland
4
dermal fibroblast
4
glioblastoma multiforme cancer stem cell
4
glomerular visceral epithelial cell
4
memory B cell
4
mesenchymal stem cell
4
midbrain
4
natural killer cell
4
neuroblastoma cell
4
neuronal stem cell
4
pancreatic stellate cell
4
skin fibroblast
4
spinal cord
3
A549
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
BE(2)-C
3
BJ cell
3
Caco-2 cell
3
ECC-1
3
GM06990
3
GM12864
3
GM12865
3
GM12878
3
GM19240
3
H1-hESC
3
HAC cell
3
HBMEC cell
3
HCT-116 cell
3
HEK293
3
HL-60
3
IMR-90
3
Jurkat
3
K562
3
NHEK
3
NT2-D1 cell
3
Normal Human Astrocytes
3
PANC-1 cell
3
RS4-11 cell
3
SAEC
3
SK-N-MC
3
SK-N-SH_RA
3
Schwann cell
3
T-47D cell
3
T-cell acute lymphoblastic leukemia
3
T-helper 1 cell
3
Th1 cell
3
Tumor-derived cell line
3
U-87 MG
3
U2OS
3
WERI-Rb-1
3
WI-38 cell
3
adipose-derived stem cell
3
aortic adventitial fibroblast
3
aortic endothelial cell
3
brain pericyte
3
bronchial epithelial cell
3
caudate nucleus
3
colon epithelial cell
3
diffuse intrinsic pontine glioma
3
endothelial cell of lymphatic vessel
3
epithelial cell of proximal tubule
3
erythroid cell
3
esophageal epithelial cell
3
fibroblast of mammary gland
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
frontal cortex
3
gabaergic neuron
3
glial cell
3
globus pallidus
3
glomerular endothelial cell
3
goblet cell
3
kidney glomerular epithelial cell
3
liposarcoma
3
lung fibroblast cell line
3
lymphoblastoid cell line
3
mast cell
3
medulla oblongata
3
mesothelial cell
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
occipital lobe
3
pancreatic polypeptide-secreting cell
3
plasma cell
3
pons
3
primordial germ cell
3
prostate gland
3
putamen
3
renal cortical epithelial cell
3
renal epithelial cell
3
renal pelvis
3
spleen
3
stomach
3
subcutaneous adipose tissue
3
superior temporal gyrus
3
synovial sarcoma cell
3
tracheal epithelial cell
3
triple-negative breast cancer
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
hindlimb muscle
2
muscle of leg
2
786-O cell
2
A-673 cell
2
Ammon's horn
2
B-lymphocyte
2
Burkitt's lymphoma
2
CD1c-positive myeloid dendritic cell
2
CD4-positive helper T cell
2
CMK
2
COLO-320 cell
2
COLO-829 cell
2
COLO205
2
D341 Med cell
2
DND-41 cell
2
Daoy
2
Ewing sarcoma
2
Fallopian Tube Carcinoma
2
G-401 cell
2
GM08714
2
GM10248
2
GM10266
2
GM10847
2
GM12801
2
GM12872
Organ
3
epithelium
3
pancreas
Date released
1
February, 2021
1
May, 2020
1
May, 2021
1
November, 2019
Software used
9
macs
deseq2
6
samtools
1
deltasvm
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
software_used.software.name!
deseq2
Showing 4 of 4 results
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Download
FileSet
DSR072AWY
released
Annotation file set
: Accessible chromatin of ATAC-seq of EndoC-βH1 cytokine-treated for GSE123404
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR170VOW
released
Annotation file set
: Binding sites annotation for Pancreas EndoC-BH1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR871UFR
released
Annotation file set
: Genetic variants with deltaSVM predictions in EndoB-CH1 beta cell ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR986YKL
released
Annotation file set
: Accessible chromatin annotation of EndoC_BH1
Lab:
AMP-T2D consortium
Project:
AMP