Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
8
accessible chromatin
2
variant allelic effects
1
binding sites
1
histone modifications
1
target gene predictions
0
gene expression
Annotation Category
2
Genetic variant effects
Annotation type Category
RNA-seq
1
ATAC-seq
1
snATAC-seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
1
cell line
1
primary cell
Biosample term
16
epithelial cell of proximal tubule
14
glomerular endothelial cell
9
endothelial cell
9
extended pluripotent stem (EPS) cells
9
progenitor cell of endocrine pancreas
7
kidney loop of Henle thin ascending limb epithelial cell
7
pancreatic ductal cell
6
fibroblast
6
kidney interstitial cell
5
glomerular visceral epithelial cell
5
hepatocyte
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
macrophage
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
mesangial cell
4
pancreatic acinar cell
4
pancreatic beta cell
4
pancreatic delta cell
4
skeletal muscle fiber
4
vascular associated smooth muscle cell
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
B Cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
Schwann cell
3
T Cell
3
Transitional Principal-Intercalated Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
adult endothelial progenitor cell
3
cardiomyocytes (cardiac muscle cell)
3
enterocyte
3
heart
3
hepatocyte(AFP)
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney resident macrophage
3
myofibroblast cell
3
nephron progenitor
3
pancreatic alpha cell
3
pancreatic polypeptide-secreting cell
3
smooth muscle cell
2
cardiac fibroblast
2
muscle of leg
2
Kupffer cell
2
MIN6
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
S-shaped body
2
T cell
2
adipocyte
2
adipose tissue
2
basal cell
2
cardiac muscle cell
2
coronary artery
2
epithelial cell of esophagus
2
gamma-delta T cell
2
goblet cell
2
heart left ventricle
2
heart right ventricle
2
hepatic stellate cell
2
kidney inner medulla collecting duct intercalated cell
2
kidney loop of Henle descending limb epithelial cell
2
left cardiac atrium
2
leukocyte
2
mast cell
2
natural killer cell
2
pancreatic stellate cell
2
renal vesicle
2
right atrium auricular region
2
tibial artery
2
tibial nerve
1
brain microvascular endothelial cell
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
Adipose SGBS cell line (adipocyte)
1
B-1 B cell
1
B-2 B cell
1
CD8-positive, alpha-beta T cell
1
EndoC_BH1
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
Preadipose SGBS cell line (adipocyte)
1
Satellite Cells, Skeletal Muscle
1
T-helper 17 cell
1
activated pancreatic stellate cell
1
alpha-beta T cell
1
alternatively activated macrophage
1
aorta
1
aortic valve
1
ascending aorta
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
body of pancreas
1
bone tissue
1
brain
1
brain pericyte
1
bronchial goblet cell
1
cardiac precursors (cardiac muscle cell)
1
caudate nucleus
1
cerebellum (Hemisphere)
1
cholangiocyte
1
choroid plexus epithelial cell
1
cortical cell of adrenal gland
1
cytotoxic T cell
1
dendritic cell
1
effector CD8-positive, alpha-beta T cell
1
endothelial cell of umbilical vein
1
epithelial cell of distal tubule
1
erythroid lineage cell
1
frontal cortex
1
glial cell
1
globus pallidus
1
granulosa cell
1
inflammatory macrophage
1
islet of Langerhans
1
keratinocyte
1
kidney
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
left renal cortex interstitium
1
left renal pelvis
1
luminal epithelial cell of prostatic duct
1
lymphocyte of B lineage
1
mammary gland epithelial cell
1
mature B cell
1
medulla oblongata
1
mesenchymal cell
1
mesenchymal stem cell
1
meso-epithelial cell
1
mesothelial cell
1
midbrain
1
middle frontal gyrus
1
mitral valve
1
muscle of arm
1
naive t cell
1
neural cell
1
occipital lobe
1
pancreas
1
pancreatic MUC5B+ductal cell
Organ
2
epithelium
1
pancreas
Date released
1
February, 2024
1
May, 2020
Software used
2
deltasvm
Lab
1
AMP-T2D consortium
1
Bing Ren, UCSD
Project
2
AMP
RFA
2
AMP
annotation_type_category!
RNA-seq
Showing 2 of 2 results
table-tab-icon
matrix-icon
Download
FileSet
DSR983IPS
released
Annotation file set
: Variant allelic effects annotation of Granulosa cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR871UFR
released
Annotation file set
: Genetic variants with deltaSVM predictions in EndoB-CH1 beta cell ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP