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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
10
accessible chromatin
9
gene expression
6
candidate regulatory elements
4
target gene predictions
3
differential activity
3
variant allelic effects
2
binding sites
2
chromatin state
2
histone modifications
Annotation Category
3
Genetic variant effects
2
cis-regulatory elements
Annotation type Category
2
ChIP-seq
1
ATAC-seq
1
DNase-seq
1
snATAC-seq
Available data
3
bed bed3+
2
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
3
tissue
1
cell line
1
primary cell
Biosample term
23
heart
19
brain
19
stomach
18
A549
17
kidney
17
muscle of arm
16
lung
15
muscle of leg
15
small intestine
14
adrenal gland
14
placenta
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
11
right kidney
11
right lung
11
thymus
10
heart left ventricle
10
hematopoietic multipotent progenitor cell
10
renal cortex interstitium
10
renal pelvis
9
CD4-positive, alpha-beta memory T cell
9
left kidney
9
liver
8
B cell
7
CD8-positive, alpha-beta memory T cell
7
K562
7
adipocyte
7
adipose tissue
7
left cardiac atrium
7
mature neutrophil
7
spinal cord
6
T cell
6
endothelial cell of umbilical vein
6
fibroblast
6
heart right ventricle
6
mononuclear cell
6
spleen
6
tibial nerve
5
CD14-positive, CD16-negative classical monocyte
5
MCF-7
5
body of pancreas
5
caudate nucleus
5
coronary artery
5
embryonic stem cell
5
sigmoid colon
5
temporal lobe
5
tibial artery
5
trophoblast cell
4
CD14-positive monocyte
4
alternatively activated macrophage
4
angular gyrus
4
aorta
4
ascending aorta
4
chorionic villus
4
endocrine pancreas
4
fibroblast of lung
4
foreskin keratinocyte
4
gastrocnemius medialis
4
hepatocyte
4
islet of Langerhans
4
keratinocyte
4
layer of hippocampus
4
mammary gland epithelial cell
4
muscle of trunk
4
neural progenitor cell
4
ovary
4
pancreas
4
psoas muscle
4
retina
4
right atrium auricular region
4
skeletal muscle myoblast
4
thoracic aorta
4
thyroid gland
4
transverse colon
3
CD4-positive, alpha-beta T cell
3
HeLa-S3
3
Peyer's patch
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
cardiac muscle cell
3
chorion membrane
3
cingulate gyrus
3
colonic mucosa
3
duodenal mucosa
3
endometrium adenocarcinoma
3
enterocyte
3
epithelial cell of esophagus
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
frontal cortex
3
immortal human breast epithelial cell line cell
3
inflammatory macrophage
3
left renal cortex interstitium
3
left renal pelvis
3
macrophage
3
mesenchymal stem cell
3
mucosa of rectum
3
myofibroblast cell
3
naive T cell
3
natural killer cell
3
neurosphere
3
regulatory T cell
3
right cardiac atrium
3
right renal cortex interstitium
3
right renal pelvis
3
skeletal muscle tissue
3
smooth muscle cell
3
stomach smooth muscle
3
substantia nigra
3
testis
3
upper lobe of left lung
2
cardiac fibroblast
2
muscle of leg
2
22Rv1
2
Brodmann (1909) area 46
2
ESC derived cell line
2
GM12878
2
H1-hESC
2
HepG2
2
KARPAS-422 cell
2
LNCaP clone FGC
2
MIN6
2
NAMALWA cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SK-N-DZ
2
SK-N-SH
2
Schwann cell
2
T47D
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
basal cell
2
breast epithelium
2
bronchial epithelial cell
2
cerebellum
2
choroid plexus epithelial cell
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
endodermal cell
2
endothelial cell
2
epithelial cell of prostate
2
epithelial cell of proximal tubule
2
erythroblast
2
esophagus
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
fibroblast of breast
2
foreskin fibroblast
2
germinal matrix
2
globus pallidus
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
goblet cell
2
hepatic stellate cell
2
kidney capillary endothelial cell
2
kidney epithelial cell
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
limb
2
lower leg skin
2
medulla oblongata
2
midbrain
2
middle frontal gyrus
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
neutrophil
2
occipital lobe
2
omental fat pad
2
parathyroid adenoma
2
pons
2
prostate gland
2
putamen
2
rectum smooth muscle tissue
2
renal cortical epithelial cell
2
skeletal muscle cell
2
skeletal muscle fiber
2
skeletal muscle satellite cell
2
skin fibroblast
2
smooth muscle cell of the brain vasculature
2
subcutaneous adipose tissue
2
superior temporal gyrus
2
tongue
2
trophoblast
2
urinary bladder
2
vagina
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
8988T
1
A172
1
A673
1
ACC112
Organ
3
kidney
3
ureter
1
epithelium
1
pancreas
Life stage
2
embryonic
Date released
2
May, 2020
2
September, 2022
1
February, 2024
Software used
3
deltasvm
2
chromhmm
Lab
4
AMP-T2D consortium
1
Bing Ren, UCSD
Project
5
AMP
RFA
5
AMP
Showing 5 of 5 results
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Download
FileSet
DSR679SAR
released
Annotation file set
: Chromatin states for BSS01153 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR680ENT
released
Annotation file set
: Chromatin states for BSS01152 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR059HGT
released
Annotation file set
: Variant allelic effects annotation of Mast cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR871UFR
released
Annotation file set
: Genetic variants with deltaSVM predictions in EndoB-CH1 beta cell ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR694REX
released
Annotation file set
: Genetic variants with deltaSVM predictions in kidney left renal pelvis DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP