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Schema
Citing CMDGA
Clear Filters
Annotation type
8
gene expression
3
differential activity
2
accessible chromatin
1
target gene predictions
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
3
ATAC-seq
Available data
3
bed bed3+
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
cell line
Biosample term
20
pigmented layer of retina
18
endothelial cell
10
hepatocyte
9
pancreatic beta cell
9
pancreatic ductal cell
9
retinal pigment epithelial cell
8
pancreatic acinar cell
8
pancreatic alpha cell
6
endothelial cell of hepatic sinusoid
6
enterocyte
6
pancreatic delta cell
5
type II pneumocyte
4
cortical cell of adrenal gland
4
glomerular visceral epithelial cell
3
EndoC_BH1
3
choroid plexus epithelial cell
3
colon epithelial cell
3
endothelial cell of lymphatic vessel
3
endothelial cell of umbilical vein
3
glomerular endothelial cell
3
goblet cell
3
keratinocyte
3
kidney glomerular epithelial cell
3
mammary gland epithelial cell
3
mesothelial cell
3
pancreatic polypeptide-secreting cell
3
renal cortical epithelial cell
3
type I pneumocyte
2
aortic endothelial cell
2
capillary endothelial cell
2
club cell
2
endocardial cell
2
epithelial cell of esophagus
2
epithelial cell of proximal tubule
2
kidney capillary endothelial cell
2
kidney epithelial cell
2
kidney tubule cell
2
luminal epithelial cell of mammary gland
2
parietal cell
2
peptic cell
2
thyroid follicular cell
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
Liver fetal (hepatocyte)
1
basal cell of epidermis
1
brain microvascular endothelial cell
1
breast epithelium
1
bronchial epithelial cell
1
bronchial goblet cell
1
cardiac endothelial cell
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
dermis microvascular lymphatic vessel endothelial cell
1
eccrine cell
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
epithelial cell of prostate
1
esophagus squamous epithelium
1
foreskin keratinocyte
1
foveolar cell of stomach
1
gastric goblet cell
1
glomerular epithelium
1
granular cell of epidermis
1
granulosa cell
1
iris pigment epithelial cell
1
kidney distal convoluted tubule epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
mammary epithelial cell
1
myoepithelial cell
1
neuroendocrine cell
1
non keratinizing barrier epithelial cell
1
non-pigmented ciliary epithelial cell
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic endothelial cell
1
paneth cell
1
parietal epithelial cell
1
placental villus capillary endothelial cell
1
pulmonary artery endothelial cell
1
renal cortex tubule
1
renal intercalated cell
1
renal principal cell
1
respiratory goblet cell
1
small intestine goblet cell
1
stomach neuroendocrine cell
1
tracheal epithelial cell
1
type B pancreatic cell
1
type I cell of adrenal cortex
1
type II cell of adrenal cortex
1
ureteric bud
1
urothelial cell
Organ
3
epithelium
3
pancreas
Date released
1
May, 2020
1
May, 2021
1
November, 2019
Software used
8
macs
6
deseq2
samtools
1
deltasvm
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
software_used.software.name!
samtools
Showing 3 of 3 results
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Download
FileSet
DSR072AWY
released
Annotation file set
: Accessible chromatin of ATAC-seq of EndoC-βH1 cytokine-treated for GSE123404
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR871UFR
released
Annotation file set
: Genetic variants with deltaSVM predictions in EndoB-CH1 beta cell ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR986YKL
released
Annotation file set
: Accessible chromatin annotation of EndoC_BH1
Lab:
AMP-T2D consortium
Project:
AMP