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Citing CMDGA
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Annotation type
16
accessible chromatin
11
gene expression
6
differential activity
4
target gene predictions
2
variant allelic effects
Annotation Category
2
Genetic variant effects
Annotation type Category
1
ATAC-seq
1
snATAC-seq
Available data
2
bed bed3+
1
bigBed narrowPeak
1
bigWig
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
1
cell line
1
primary cell
Biosample term
1
EndoC_BH1
1
body of pancreas
1
islet of Langerhans
1
pancreas
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
pancreatic delta cell
1
pancreatic ductal cell
1
pancreatic endocrine cell
1
pancreatic polypeptide-secreting cell
Organ
2
epithelium
2
pancreas
Life stage
1
adult
Date released
1
February, 2024
1
May, 2020
Software used
2
deltasvm
Lab
1
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
2
AMP
RFA
2
AMP
Showing 2 of 2 results
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FileSet
DSR871UFR
released
Annotation file set
: Genetic variants with deltaSVM predictions in EndoB-CH1 beta cell ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR450SMN
released
Annotation file set
: Genetic variants with deltaSVM predictions in pancreatic beta cell snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP