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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
binding sites
1
histone modifications
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
RNA-seq
ATAC-seq
2
ChIP-seq
1
HiC
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
cell line
Biosample term
95
monocyte
87
heart
82
stomach
70
brain
67
muscle of arm
66
kidney
66
lung
63
HeLa-S3
61
A549
61
small intestine
58
adrenal gland
58
placenta
muscle of leg
55
large intestine
54
muscle of back
53
common myeloid progenitor, CD34-positive
52
left lung
47
thymus
45
H1-hESC
45
right lung
44
CD8-positive, alpha-beta T cell
42
hematopoietic multipotent progenitor cell
42
right kidney
40
K562
40
renal cortex interstitium
40
renal pelvis
39
B cell
38
liver
36
left kidney
34
neural progenitor cell
33
spinal cord
32
CD4-positive, alpha-beta memory T cell
30
endothelial cell
30
heart left ventricle
30
spleen
25
MCF-7
25
fibroblast
23
macrophage
22
CD8-positive, alpha-beta memory T cell
22
epithelial cell of proximal tubule
22
foreskin keratinocyte
22
pancreatic ductal cell
22
sigmoid colon
21
T cell
21
adipose tissue
20
breast cancer cell
20
glomerular endothelial cell
20
hepatocyte
20
mononuclear cell
20
natural killer cell
20
trophoblast cell
19
heart right ventricle
19
pancreas
19
psoas muscle
18
HFFc6
18
endothelial cell of umbilical vein
18
foreskin fibroblast
18
keratinocyte
17
adipocyte
17
body of pancreas
17
gastrocnemius medialis
17
mesenchymal stem cell
17
ovary
17
retina
16
CD14-positive monocyte
16
chorionic villus
16
muscle of trunk
16
pancreatic beta cell
16
regulatory T cell
16
smooth muscle cell
16
thyroid gland
16
tibial nerve
16
transverse colon
16
upper lobe of left lung
15
HepG2
15
caudate nucleus
15
fibroblast of cardiac tissue
15
fibroblast of lung
15
layer of hippocampus
15
pancreatic alpha cell
15
testis
14
CD4-positive, alpha-beta T cell
14
GM12878
14
cardiac muscle cell
14
endocrine pancreas
14
mammary gland epithelial cell
14
pancreatic delta cell
14
skeletal muscle myoblast
13
H9
13
Peyer's patch
13
aorta
13
bronchial epithelial cell
13
neurosphere
13
pancreatic acinar cell
13
pericyte cell
13
skeletal muscle tissue
12
T-helper 17 cell
12
left renal cortex interstitium
12
neuroblastoma cell
12
osteoblast
12
prostate gland
11
T-helper 1 cell
11
excitatory neuron
11
fibroblast of dermis
11
left cardiac atrium
11
left renal pelvis
11
mammary epithelial cell
11
neutrophil
11
right renal pelvis
11
skeletal muscle satellite cell
11
temporal lobe
11
tibial artery
10
22Rv1
10
Rhabdomyosarcoma
10
T-helper 2 cell
10
astrocyte
10
breast epithelium
10
choroid plexus epithelial cell
10
coronary artery
10
epithelial cell of prostate
10
esophagus squamous epithelium
10
gastric cancer cell
10
hepatic stellate cell
10
lymphocyte
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
right renal cortex interstitium
10
substantia nigra
10
trophoblast
9
SK-N-DZ
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
erythroblast
9
kidney tubule cell
9
liposarcoma
9
neuronal stem cell
9
parathyroid adenoma
9
tongue
8
B-lymphoblastoid cell line
8
GM12865
8
HEK293
8
NAMALWA cell
8
ascending aorta
8
cingulate gyrus
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
embryonic stem cell
8
endodermal cell
8
esophagus
8
esophagus muscularis mucosa
8
fibroblast cell line
8
globus pallidus
8
glomerular visceral epithelial cell
8
immortal human breast epithelial cell line cell
8
islet of Langerhans
8
limb
8
lower leg skin
8
myoepithelial cell of mammary gland
8
naive T cell
8
naive thymus-derived CD4-positive, alpha-beta T cell
8
omental fat pad
8
retinal pigment epithelial cell
8
right atrium auricular region
8
skeletal muscle fiber
8
skin fibroblast
8
thoracic aorta
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
Ammon's horn
7
BE(2)-C
7
BJ cell
7
CD1c-positive myeloid dendritic cell
7
CMK
7
Caco-2 cell
7
GM06990
7
GM12864
7
HT-29
7
IMR-90
7
SK-N-MC
7
SK-N-SH
7
T47D
7
WERI-Rb-1
7
angular gyrus
7
cerebellum
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
endothelial cell of hepatic sinusoid
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
frontal cortex
7
mature neutrophil
7
mesendoderm
7
putamen
Organ
1
epithelium
1
pancreas
Date released
2
February, 2021
1
March, 2020
Software used
2
macs
1
hiccups
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
annotation_type_category!
RNA-seq
ATAC-seq
biosample_term_name!
muscle of leg
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR257RKK
released
Annotation file set
: Histone modifications annotation for Pancreas EndoC-BH1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR170VOW
released
Annotation file set
: Binding sites annotation for Pancreas EndoC-BH1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR373FUA
released
Annotation file set
: A target gene prediction annotation in EndoC_BH1 of DSR433ZII Hi-C
Lab:
AMP-T2D consortium
Project:
AMP