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Citing CMDGA
Clear Filters
Annotation type
1
target gene predictions
1
variant allelic effects
Annotation Category
1
Genetic variant effects
1
Target gene links
Annotation type Category
RNA-seq
1
ATAC-seq
1
HiC
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
cell line
Biosample term
81
heart
80
stomach
66
lung
66
muscle of arm
64
HeLa-S3
64
brain
61
small intestine
60
kidney
59
A549
59
adrenal gland
56
muscle of leg
55
placenta
54
common myeloid progenitor, CD34-positive
54
large intestine
54
muscle of back
52
left lung
45
thymus
44
right lung
43
H1-hESC
42
right kidney
39
hematopoietic multipotent progenitor cell
39
renal cortex interstitium
38
K562
38
renal pelvis
36
left kidney
36
liver
35
B cell
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
30
spinal cord
28
heart left ventricle
28
spleen
24
adipose tissue
22
CD8-positive, alpha-beta memory T cell
22
sigmoid colon
21
MCF-7
21
epithelial cell of proximal tubule
21
trophoblast cell
19
HFFc6
19
foreskin keratinocyte
19
mononuclear cell
19
psoas muscle
18
adipocyte
18
body of pancreas
18
endothelial cell
18
glomerular endothelial cell
18
natural killer cell
17
endothelial cell of umbilical vein
17
heart right ventricle
17
muscle of trunk
17
ovary
16
CD8-positive, alpha-beta T cell
16
H9
16
chorionic villus
16
fibroblast of lung
16
gastrocnemius medialis
16
thyroid gland
16
transverse colon
15
T cell
15
tibial nerve
14
CD4-positive, alpha-beta T cell
14
T-helper 1 cell
14
T-helper 17 cell
14
endocrine pancreas
13
GM12878
13
Peyer's patch
13
T-helper 2 cell
13
aorta
13
caudate nucleus
13
foreskin fibroblast
13
mesenchymal stem cell
13
neural progenitor cell
13
neurosphere
13
pancreas
13
regulatory T cell
13
smooth muscle cell
12
cardiac muscle cell
12
coronary artery
12
fibroblast of dermis
12
hepatocyte
12
layer of hippocampus
12
left renal cortex interstitium
12
pancreatic ductal cell
12
retina
12
skeletal muscle tissue
12
testis
12
upper lobe of left lung
11
fibroblast
11
mammary gland epithelial cell
11
pericyte cell
11
skeletal muscle myoblast
10
SK-N-SH
10
angular gyrus
10
ascending aorta
10
breast epithelium
10
dermis blood vessel endothelial cell
10
fibroblast of cardiac tissue
10
keratinocyte
10
left cardiac atrium
10
right renal cortex interstitium
10
temporal lobe
10
tibial artery
9
HepG2
9
chorion membrane
9
cingulate gyrus
9
colonic mucosa
9
esophagus squamous epithelium
9
islet of Langerhans
9
left renal pelvis
9
macrophage
9
neutrophil
9
pancreatic beta cell
9
pancreatic delta cell
9
parathyroid adenoma
9
right renal pelvis
9
substantia nigra
9
thoracic aorta
8
22Rv1
8
SK-N-DZ
8
bronchial epithelial cell
8
duodenal mucosa
8
epithelial cell of prostate
8
esophagus
8
immortal human breast epithelial cell line cell
8
lower leg skin
8
lymphocyte
8
myoepithelial cell of mammary gland
8
naive T cell
8
omental fat pad
8
pancreatic acinar cell
8
pituitary stalk
8
progenitor cell of endocrine pancreas
8
tongue
7
LNCaP clone FGC
7
T47D
7
WI38
7
astrocyte
7
cerebellum
7
endometrium adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
limb
7
right atrium auricular region
7
skeletal muscle satellite cell
7
stomach smooth muscle
7
trophoblast
6
Brodmann (1909) area 46
6
HCT116
6
HEK293
6
IMR-90
6
NAMALWA cell
6
T-cell
6
alternatively activated macrophage
6
cardiomyocytes (cardiac muscle cell)
6
choroid plexus epithelial cell
6
colon epithelial cell
6
dendritic cell
6
embryonic stem cell
6
endodermal cell
6
esophagus muscularis mucosa
6
fibroblast of breast
6
kidney tubule cell
6
monocyte
6
mucosa of rectum
6
pancreatic alpha cell
6
prostate gland
6
vagina
5
A673
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
Ammon's horn
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
GM06990
Organ
2
epithelium
2
pancreas
Date released
1
March, 2020
1
May, 2020
Software used
macs
6
deseq2
6
samtools
1
deltasvm
1
hiccups
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
annotation_type_category!
RNA-seq
software_used.software.name!
macs
Showing 2 of 2 results
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Download
FileSet
DSR871UFR
released
Annotation file set
: Genetic variants with deltaSVM predictions in EndoB-CH1 beta cell ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR373FUA
released
Annotation file set
: A target gene prediction annotation in EndoC_BH1 of DSR433ZII Hi-C
Lab:
AMP-T2D consortium
Project:
AMP