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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
chromatin state
1
accessible chromatin
Annotation Category
3
cis-regulatory elements
Annotation type Category
2
ChIP-seq
1
ATAC-seq
DNase-seq
Available data
2
bed bed9
1
bed bed3+
1
bigWig
File set status
3
released
Genome assembly (visualization)
14
hg19
3
GRCh38
Organism
3
Homo sapiens
Biosample type
2
tissue
1
cell line
Biosample term
100
monocyte
54
HeLa-S3
38
H1-hESC
27
neural progenitor cell
23
kidney
22
K562
22
fibroblast
22
heart
20
brain
20
stomach
19
HFFc6
19
endothelial cell
19
macrophage
19
pericyte cell
18
A549
17
hepatocyte
17
lung
16
endothelial cell of hepatic sinusoid
16
muscle of arm
16
small intestine
15
adrenal gland
15
muscle of leg
15
placenta
14
smooth muscle cell
13
common myeloid progenitor, CD34-positive
13
excitatory neuron
13
large intestine
13
left lung
13
muscle of back
11
B cell
11
T cell
11
astrocyte
11
coronary artery
11
right lung
11
thymus
10
heart left ventricle
10
hematopoietic multipotent progenitor cell
10
liver
10
right kidney
10
tibial nerve
9
CD4-positive, alpha-beta memory T cell
9
left kidney
9
renal cortex interstitium
9
renal pelvis
9
tibial artery
8
body of pancreas
8
caudate nucleus
8
islet of Langerhans
8
right atrium auricular region
8
spinal cord
8
spleen
8
substantia nigra
7
CD8-positive, alpha-beta memory T cell
7
GM12878
7
H9
7
adipose tissue
7
ascending aorta
7
cerebellum
7
colon epithelial cell
7
frontal cortex
7
lymphocyte
7
omental fat pad
7
putamen
7
subcutaneous adipose tissue
6
HepG2
6
fibroblast of cardiac tissue
6
iPSC derived cell line
6
keratinocyte
6
left cardiac atrium
6
lymphoblastoid cell line
6
mononuclear cell
6
olfactory receptor cell
6
pancreatic acinar cell
6
pancreatic ductal cell
6
skeletal muscle satellite cell
5
Ammon's horn
5
MCF-7
5
amygdala
5
anterior cingulate cortex
5
cortical cell of adrenal gland
5
erythroblast
5
heart right ventricle
5
hypothalamus
5
inhibitory neuron
5
luminal epithelial cell of mammary gland
5
mammary gland epithelial cell
5
nucleus accumbens
5
ovary
5
regulatory T cell
5
right lobe of liver
5
sigmoid colon
5
thyroid gland
5
transverse colon
5
trophoblast cell
5
type II pneumocyte
4
C1 segment of cervical spinal cord
4
CD14-positive monocyte
4
CyT49
4
HUES8
4
T-helper 1 cell
4
T-helper 17 cell
4
T-helper 2 cell
4
angular gyrus
4
aorta
4
blood vessel smooth muscle cell
4
cerebellum (Hemisphere)
4
chorionic villus
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endocrine pancreas
4
endothelial cell of umbilical vein
4
enteric smooth muscle cell
4
foreskin keratinocyte
4
gabaergic neuron
4
gastrocnemius medialis
4
gastrocnemius medialis(Muscle - Skeletal)
4
glutamatergic neuron
4
layer of hippocampus
4
left ventricle myocardium
4
muscle of trunk
4
natural killer cell
4
pancreas
4
pancreatic beta cell
4
psoas muscle
4
retina
4
skin fibroblast
4
skin of body
4
smooth muscle cell of the esophagus
4
temporal lobe
4
testis
4
thoracic aorta
3
CD4-positive helper T cell
3
HCT116
3
Peyer's patch
3
adipocyte
3
blood cell
3
chorion membrane
3
endocardial cell
3
endometrium adenocarcinoma
3
endothelial cell of lymphatic vessel
3
enteric neuron
3
enterocyte
3
esophagus
3
esophagus muscularis mucosa
3
fibroblast of dermis
3
fibroblast of lung
3
immortal human breast epithelial cell line cell
3
mesenchymal stem cell
3
mesothelial cell
3
microglial cell
3
naive T cell
3
neurosphere
3
neutrophil
3
oligodendrocyte precursor cell
3
osteoblast
3
pancreatic A cell
3
pancreatic alpha cell
3
prostate gland
3
right cardiac atrium
3
schwann cell
3
skeletal muscle fiber
3
skeletal muscle tissue
3
type B pancreatic cell
3
type I pneumocyte
3
upper lobe of left lung
3
vagina
2
22Rv1
2
Brodmann (1909) area 46
2
CD4-positive, alpha-beta T cell
2
CD8-positive, alpha-beta T cell
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
LNCaP clone FGC
2
Muller cell
2
NAMALWA cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SK-N-DZ
2
SK-N-SH
2
T47D
2
alveolar macrophage
2
basal cell
2
basal cell of epidermis
2
breast epithelium
2
bronchial epithelial cell
2
cardiac endothelial cell
2
cardiac muscle cell
2
ciliated cell
2
cingulate gyrus
2
club cell
2
colon goblet cell
2
colonic mucosa
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
duodenal mucosa
2
eccrine cell
2
endodermal cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
epithelial cell of prostate
Organ
2
kidney
1
epithelium
1
pancreas
Life stage
2
embryonic
Date released
2
September, 2022
1
November, 2019
Software used
2
chromhmm
1
macs
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
annotation_type_category!
DNase-seq
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR805DGE
released
Annotation file set
: Chromatin states for BSS01151 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR654FXG
released
Annotation file set
: Chromatin states for BSS01150 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR986YKL
released
Annotation file set
: Accessible chromatin annotation of EndoC_BH1
Lab:
AMP-T2D consortium
Project:
AMP