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Citing CMDGA
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Annotation type
6
accessible chromatin
1
gene expression
Annotation Category
6
cis-regulatory elements
1
Gene expression levels
Annotation type Category
6
ATAC-seq
1
snRNA-seq
Available data
6
bed bed3+
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
6
cell line
1
primary cell
Biosample term
6
EndoC_BH1
2
skeletal muscle fiber
1
adipocyte
1
endothelial cell
1
glial cell
1
leukocyte
1
mesenchymal stem cell
1
neural cell
1
skeletal muscle satellite cell
1
smooth muscle cell
1
type I muscle cell
1
type II muscle cell
Organ
6
epithelium
6
pancreas
1
connective tissue
Date released
6
May, 2021
1
February, 2024
Software used
18
macs
14
r
7
samtools
6
chromhmm
6
deseq2
4
abc
2
deltasvm
2
encode-ccres
1
deeptools
1
hiccups
1
umitools
Lab
6
AMP-T2D consortium
1
Stephen Parker, UMich
Project
7
AMP
RFA
6
AMP
1
AMP2
biosample_term_name!
renal cortical epithelial cell
Showing 7 of 7 results
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FileSet
DSR313PSZ
released
Annotation file set
: IFNα induces early changes in chromatin accessibility of GSE133219, stable open chromatin regions detected at 2 h(fast response)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR521RFR
released
Annotation file set
: IFNα induces early changes in chromatin accessibility of GSE133219, loss open chromatin regions detected at 2 h(fast response)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR062QKS
released
Annotation file set
: IFNα induces early changes in chromatin accessibility of GSE133219, gained open chromatin regions detected at 2 h(fast response)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR955RJH
released
Annotation file set
: IFNα induces early changes in chromatin accessibility of GSE133219, stable open chromatin regions detected at 24 h(late response)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR195HKC
released
Annotation file set
: IFNα induces early changes in chromatin accessibility of GSE133219, loss open chromatin regions detected at 24 h(late response)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR460ECL
released
Annotation file set
: IFNα induces early changes in chromatin accessibility of GSE133219, gained open chromatin regions detected at 24 h(late response)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP