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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
chromatin state
1
variant allelic effects
Annotation Category
4
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
4
ChIP-seq
1
ATAC-seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
4
in vitro differentiated cells
1
cell line
Biosample term
5
islet of Langerhans
4
adipocyte
3
B cell
3
CD8-positive, alpha-beta T cell
3
endothelial cell of umbilical vein
3
heart
3
monocyte
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
skeletal muscle myoblast
3
tibial artery
3
tibial nerve
2
cardiac fibroblast
2
muscle of leg
2
CD4-positive, alpha-beta T cell
2
ESC derived cell line
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
caudate nucleus
2
central memory CD8-positive, alpha-beta T cell
2
coronary artery
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
gamma-delta T cell
2
heart left ventricle
2
left renal cortex interstitium
2
liver
2
mature natural killer cell
2
medulla oblongata
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
midbrain
2
naive regulatory T cell
2
pancreas
2
regulatory T cell
2
right atrium auricular region
2
right kidney
2
right renal cortex interstitium
2
subcutaneous adipose tissue
1
brain microvascular endothelial cell
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
Adipose SGBS cell line (adipocyte)
1
CD34-PB
1
EndoC_BH1
1
GM12878
1
H1-hESC
1
Heart fetal (cardiac muscle cell)
1
HepG2
1
K562
1
Liver fetal (hepatocyte)
1
Pancreatic islets
1
Preadipose SGBS cell line (adipocyte)
1
activated CD4-positive, alpha-beta T cell
1
adipose tissue
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
ascending aorta
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
body of pancreas
1
brain
1
brain pericyte
1
cardiac muscle cell
1
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
cerebellum (Hemisphere)
1
choroid plexus epithelial cell
1
cingulate gyrus
1
colonic mucosa
1
duodenal mucosa
1
epithelial cell of proximal tubule
1
erythroblast
1
fibroblast of lung
1
frontal cortex
1
globus pallidus
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
heart right ventricle
1
hepatic stellate cell
1
hepatocyte
1
immature natural killer cell
1
inflammatory macrophage
1
keratinocyte
1
kidney
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
layer of hippocampus
1
left cardiac atrium
1
left renal pelvis
1
lymphocyte of B lineage (iPSC)
1
macrophage
1
mammary epithelial cell
1
megakaryocyte
1
mid-frontal lobe
1
middle frontal gyrus
1
mucosa of rectum
1
muscle of arm
1
myeloid dendritic cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
natural killer cell
1
neutrophil
1
occipital lobe
1
plasma cell
1
plasmacytoid dendritic cell
1
pons
1
putamen
1
rectum smooth muscle tissue
1
renal cortex interstitium
1
renal cortical epithelial cell
1
renal pelvis
1
retina
1
right renal pelvis
1
skeletal muscle
1
skeletal muscle cell
1
smooth muscle cell of the brain vasculature
1
stomach smooth muscle
1
subcutaneous abdominal adipose tissue
1
substantia nigra
1
superior temporal gyrus
1
temporal lobe
1
thoracic aorta
1
thymus
Organ
4
connective tissue
1
epithelium
1
pancreas
Date released
19
May, 2021
7
February, 2021
6
September, 2022
4
August, 2017
4
February, 2024
2
March, 2023
1
February, 2023
1
June, 2020
1
March, 2020
1
May, 2020
1
November, 2019
1
November, 2021
1
November, 2022
1
October, 2019
Software used
4
chromhmm
1
deltasvm
Lab
4
Stephen Parker, UMich
1
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR871UFR
released
Annotation file set
: Genetic variants with deltaSVM predictions in EndoB-CH1 beta cell ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR644651
released
Annotation file set
: ChromHMM 13-state model for hASC-t4
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR798156
released
Annotation file set
: ChromHMM 13-state model for hASC-t3
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR104634
released
Annotation file set
: ChromHMM 13-state model for hASC-t2
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR863340
released
Annotation file set
: ChromHMM 13-state model for hASC-t1
Lab:
Stephen Parker, UMich
Project:
AMP