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Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
gene expression
1
target gene predictions
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Gene expression levels
1
Genetic variant effects
1
Target gene links
Annotation type Category
3
snATAC-seq
1
ATAC-seq
1
scRNA-seq
Available data
4
bed bed3+
4
bigWig
3
bigBed narrowPeak
1
tsv
File set status
5
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
102
monocyte
57
A549
40
common myeloid progenitor, CD34-positive
35
hematopoietic multipotent progenitor cell
25
adrenal gland
24
adipose tissue
24
liver
23
B cell
23
retina
22
body of pancreas
22
stomach
21
tibial nerve
20
pigmented layer of retina
20
spleen
19
CD8-positive, alpha-beta T cell
19
K562
19
MCF-7
18
caudate nucleus
18
hepatocyte
18
omental fat pad
17
islet of Langerhans
16
epithelial cell of proximal tubule
16
gastrocnemius medialis
16
sigmoid colon
16
subcutaneous adipose tissue
16
thyroid gland
16
transverse colon
15
CD8-positive, alpha-beta memory T cell
15
ascending aorta
15
heart left ventricle
15
mononuclear cell
14
coronary artery
14
endothelial cell of hepatic sinusoid
14
natural killer cell
14
pancreas
14
right atrium auricular region
14
substantia nigra
14
tibial artery
13
Peyer's patch
13
cerebellum
13
glomerular endothelial cell
13
ovary
13
upper lobe of left lung
12
CD14-positive monocyte
12
T-helper 1 cell
12
endocrine pancreas
12
frontal cortex
12
layer of hippocampus
12
psoas muscle
12
regulatory T cell
11
HeLa-S3
11
aorta
11
putamen
11
temporal lobe
10
Ammon's horn
10
T cell
10
angular gyrus
10
esophagus squamous epithelium
10
lower leg skin
9
CD4-positive, alpha-beta memory T cell
9
breast epithelium
9
endometrium adenocarcinoma
9
endothelial cell
9
esophagus muscularis mucosa
9
immortal human breast epithelial cell line cell
9
kidney
9
kidney tubule cell
9
parathyroid adenoma
9
right lobe of liver
9
skeletal muscle tissue
9
testis
9
thoracic aorta
9
vagina
8
CD4-positive, alpha-beta T cell
8
cingulate gyrus
8
colonic mucosa
8
duodenal mucosa
8
esophagus
8
fibroblast of breast
8
mucosa of rectum
8
muscle layer of colon
8
muscle layer of duodenum
8
myoepithelial cell of mammary gland
8
prostate gland
8
small intestine
8
stomach smooth muscle
7
LNCaP clone FGC
7
T-helper 2 cell
7
T47D
7
gastroesophageal sphincter
7
kidney glomerular epithelial cell
7
kidney loop of Henle thin ascending limb epithelial cell
6
Brodmann (1909) area 46
6
globus pallidus
6
hepatic stellate cell
6
lung
6
mammary gland epithelial cell
6
middle frontal gyrus
6
muscle cell
6
naive T cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
right cardiac atrium
6
skeletal muscle satellite cell
6
uterus
5
C1 segment of cervical spinal cord
5
GM12878
5
adipocyte
5
amygdala
5
anterior cingulate cortex
5
cerebellar cortex
5
cerebellum (Hemisphere)
5
dermis blood vessel endothelial cell
5
fibroblast of lung
5
gastrocnemius medialis(Muscle - Skeletal)
5
glomerular visceral epithelial cell
5
heart
5
heart right ventricle
5
hypothalamus
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
left ventricle myocardium
5
mature neutrophil
5
medulla oblongata
5
mesenchymal stem cell
5
midbrain
5
neutrophil
5
nucleus accumbens
5
pancreatic alpha cell
5
pancreatic beta cell
5
pons
5
skeletal muscle myoblast
5
subcutaneous abdominal adipose tissue
5
superior temporal gyrus
4
A172
4
ACC112
4
ACHN
4
C4-2B
4
Caki2
4
DOHH2
4
GM04503
4
GM04504
4
GM23248
4
GM23338
4
H4
4
H54
4
HAP-1
4
HCT116
4
HL-60
4
HS-27A
4
HS-5
4
HT-29
4
HT1080
4
KBM-7
4
KMS-11
4
LHCN-M2
4
Loucy
4
M059J
4
MM.1S
4
NB4
4
NCI-H929
4
OCI-LY1
4
OCI-LY3
4
OCI-LY7
4
PC-3
4
RCC 7860
4
RPMI7951
4
RPMI8226
4
RWPE1
4
RWPE2
4
SJSA1
4
SK-MEL-5
4
SU-DHL-6
4
SW480
4
T-helper 17 cell
4
bipolar neuron
4
bone tissue
4
cartilage tissue
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
fibroblast of dermis
4
glutamatergic neuron
4
iPS-11a
4
iPS-15b
4
iPS-18a
4
iPS-18c
4
iPS-20b
4
inflammatory macrophage
4
kidney connecting tubule epithelial cell
4
kidney interstitial cell
4
mucosa of stomach
4
occipital lobe
4
pancreatic delta cell
4
peripheral blood mononuclear cell
4
urinary bladder
3
8988T
3
AG08395 cell
3
AG08396 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
Organ
5
epithelium
5
pancreas
Life stage
5
adult
1
newborn
1
unknown
Date released
2
February, 2024
1
February, 2021
1
May, 2021
1
October, 2019
Software used
2
macs
1
cicero
1
deltasvm
1
r
Lab
3
Kyle Gaulton, UCSD
2
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
annotation_type!
differential activity
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR652WFX
released
Annotation file set
: GSE84133 Gene expression levels (pseudobulks UMI) of pancreatic beta cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR616QUT
released
Annotation file set
: Pancreatic beta cell accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR376KYK
released
Annotation file set
: pancreatic beta cell co-accessibility linking chromatin sites to gene promoters annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR450SMN
released
Annotation file set
: Genetic variants with deltaSVM predictions in pancreatic beta cell snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR373LDZ
released
Annotation file set
: pancreatic beta cell accessible chromatin annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP