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Schema
Citing CMDGA
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Annotation type
2
differential activity
1
target gene predictions
1
variant allelic effects
Annotation Category
2
Gene expression levels
1
Genetic variant effects
1
Target gene links
Annotation type Category
2
RNA-seq
1
ATAC-seq
1
HiC
Available data
tsv
2
bed bed3+
File set status
4
released
Genome assembly (visualization)
2
hg19
Organism
4
Homo sapiens
Biosample type
4
cell line
Biosample term
81
stomach
80
heart
67
lung
66
brain
66
muscle of arm
64
HeLa-S3
62
small intestine
61
kidney
60
adrenal gland
59
A549
56
muscle of leg
56
placenta
54
common myeloid progenitor, CD34-positive
54
large intestine
54
muscle of back
52
left lung
45
thymus
44
right lung
43
H1-hESC
42
right kidney
40
liver
39
hematopoietic multipotent progenitor cell
39
renal cortex interstitium
38
K562
38
renal pelvis
36
left kidney
35
B cell
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
31
spinal cord
29
heart left ventricle
29
spleen
27
islet of Langerhans
26
adipose tissue
22
CD8-positive, alpha-beta memory T cell
22
sigmoid colon
21
MCF-7
21
trophoblast cell
19
HFFc6
19
foreskin keratinocyte
19
mononuclear cell
19
psoas muscle
18
adipocyte
18
body of pancreas
18
endothelial cell of umbilical vein
18
ovary
17
T cell
17
gastrocnemius medialis
17
heart right ventricle
17
muscle of trunk
17
thyroid gland
17
transverse colon
16
H9
16
chorionic villus
16
fibroblast of lung
16
macrophage
16
natural killer cell
16
regulatory T cell
16
tibial nerve
15
CD8-positive, alpha-beta T cell
15
T-helper 1 cell
15
endocrine pancreas
15
hepatocyte
14
CD4-positive, alpha-beta T cell
14
T-helper 17 cell
14
T-helper 2 cell
14
caudate nucleus
14
foreskin fibroblast
14
layer of hippocampus
14
mesenchymal stem cell
14
pancreas
14
skeletal muscle tissue
14
smooth muscle cell
13
GM12878
13
Peyer's patch
13
coronary artery
13
endothelial cell
13
fibroblast
13
neural progenitor cell
13
neurosphere
13
neutrophil
13
testis
12
aorta
12
cardiac muscle cell
12
fibroblast of dermis
12
keratinocyte
12
left renal cortex interstitium
12
retina
12
skeletal muscle myoblast
12
upper lobe of left lung
11
mammary gland epithelial cell
11
pericyte cell
10
SK-N-SH
10
angular gyrus
10
ascending aorta
10
breast epithelium
10
dermis blood vessel endothelial cell
10
esophagus
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
fibroblast of cardiac tissue
10
left cardiac atrium
10
left renal pelvis
10
monocyte
10
right renal cortex interstitium
10
substantia nigra
10
temporal lobe
10
tibial artery
9
HepG2
9
chorion membrane
9
cingulate gyrus
9
colonic mucosa
9
duodenal mucosa
9
endometrium adenocarcinoma
9
epithelial cell of prostate
9
immortal human breast epithelial cell line cell
9
lower leg skin
9
lymphocyte
9
parathyroid adenoma
9
right renal pelvis
9
thoracic aorta
8
22Rv1
8
SK-N-DZ
8
bronchial epithelial cell
8
cerebellum
8
endodermal cell
8
eye
8
fibroblast of breast
8
frontal cortex
8
kidney tubule cell
8
myoepithelial cell of mammary gland
8
naive T cell
8
naive thymus-derived CD4-positive, alpha-beta T cell
8
omental fat pad
8
pituitary stalk
8
prostate gland
8
right atrium auricular region
8
skeletal muscle satellite cell
8
subcutaneous adipose tissue
8
tongue
8
vagina
7
LNCaP clone FGC
7
T47D
7
WI38
7
astrocyte
7
epithelial cell of proximal tubule
7
gastroesophageal sphincter
7
induced pluripotent stem cell
7
limb
7
stomach smooth muscle
7
trophoblast
6
Brodmann (1909) area 46
6
HCT116
6
HEK293
6
IMR-90
6
NAMALWA cell
6
T-cell
6
choroid plexus epithelial cell
6
colon epithelial cell
6
dendritic cell
6
dermis lymphatic vessel endothelial cell
6
embryonic stem cell
6
epithelial cell of esophagus
6
erythroblast
6
foreskin melanocyte
6
glomerular endothelial cell
6
glomerular visceral epithelial cell
6
iPSC derived cell line
6
kidney epithelial cell
6
kidney glomerular epithelial cell
lymphoblastoid cell line
6
mammary epithelial cell
6
mucosa of rectum
6
muscle layer of duodenum
6
putamen
6
uterus
5
A673
5
Ammon's horn
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
GM06990
5
GM08714
5
GM12864
5
GM12865
5
GM12875
5
GM19238
5
GM19239
5
GM19240
5
HAP-1
5
HL-60
5
HT-29
5
KARPAS-422 cell
5
MM.1S
5
NB4
5
OCI-LY7
5
PC-9
5
Panc1
5
SK-N-MC
5
WERI-Rb-1
5
alternatively activated macrophage
Organ
4
epithelium
4
pancreas
Date released
2
March, 2023
1
March, 2020
1
May, 2020
Software used
macs
6
deseq2
6
samtools
1
deltasvm
1
hiccups
Lab
2
AMP-T2D consortium
2
Anna Gloyn, Oxford
Project
2
AMP
2
community
RFA
2
AMP
2
community
software_used.software.name!
macs
biosample_term_name!
lymphoblastoid cell line
files.file_type!
tsv
Showing 4 of 4 results
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Download
FileSet
DSR273DTH
released
Annotation file set
: Differential activity of transcriptomic analysis in EndoC-βH1 cells following siRNA mediated knockdown
Lab:
Anna Gloyn, Oxford
Project:
community
FileSet
DSR163KQO
released
Annotation file set
: Differential activity of transcriptomic analysis in EndoC-βH1 cells following CRISPR/Cas9 knockout
Lab:
Anna Gloyn, Oxford
Project:
community
FileSet
DSR871UFR
released
Annotation file set
: Genetic variants with deltaSVM predictions in EndoB-CH1 beta cell ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR373FUA
released
Annotation file set
: A target gene prediction annotation in EndoC_BH1 of DSR433ZII Hi-C
Lab:
AMP-T2D consortium
Project:
AMP