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Schema
Citing CMDGA
Clear Filters
Annotation type
39
target gene predictions
8
gene expression
2
binding sites
2
chromatin state
1
accessible chromatin
1
candidate regulatory elements
1
histone modifications
Annotation Category
5
cis-regulatory elements
Annotation type Category
4
ChIP-seq
1
DNase-seq
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
4
cell line
1
stem cell
Biosample term
27
heart
27
kidney
27
retina
22
stomach
21
A549
21
brain
20
pigmented layer of retina
19
monocyte
18
endothelial cell
18
fibroblast
18
neural progenitor cell
16
B cell
16
lung
16
muscle of arm
16
muscle of leg
16
placenta
16
small intestine
15
adrenal gland
14
embryonic stem cell
14
large intestine
14
liver
13
adipocyte
13
common myeloid progenitor, CD34-positive
13
excitatory neuron
13
left lung
13
macrophage
13
muscle of back
12
endothelial cell of hepatic sinusoid
12
hematopoietic multipotent progenitor cell
12
islet of Langerhans
12
retinal pigment epithelial cell
11
T cell
11
heart left ventricle
11
hepatocyte
11
pericyte cell
11
right lung
11
thymus
10
K562
10
spinal cord
9
CD4-positive, alpha-beta memory T cell
9
EndoC_BH1
9
MCF-7
9
adipose tissue
9
astrocyte
9
breast cancer cell
9
endothelial cell of umbilical vein
9
erythroblast
9
keratinocyte
9
left kidney
9
renal pelvis
9
right kidney
9
smooth muscle cell
8
fibroblast of cardiac tissue
8
pancreas
8
pancreatic beta cell
8
pancreatic ductal cell
8
regulatory T cell
8
renal cortex interstitium
8
spleen
7
CD8-positive, alpha-beta memory T cell
7
HepG2
7
fibroblast cell line
7
foreskin fibroblast
7
left cardiac atrium
7
osteoblast
7
pancreatic acinar cell
6
CD8-positive, alpha-beta T cell
6
SGBS preadipocytes
6
T-helper 1 cell
6
cardiac muscle cell
6
caudate nucleus
6
chondrocyte
6
coronary artery
6
fibroblast of lung
6
foreskin keratinocyte
6
glutamatergic neuron
6
heart right ventricle
6
mammary epithelial cell
6
mammary gland epithelial cell
6
mature neutrophil
6
mesenchymal stem cell
6
natural killer cell
6
skeletal muscle myoblast
6
skeletal muscle satellite cell
6
tibial artery
5
CD14-positive, CD16-negative classical monocyte
5
GM12878
5
H1-hESC
5
T-helper 17 cell
5
T-helper 2 cell
5
bronchial epithelial cell
5
choroid plexus epithelial cell
5
gastrocnemius medialis
5
hepatic stellate cell
5
inhibitory neuron
5
layer of hippocampus
5
melanoma
5
tibial nerve
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
BE(2)-C
4
BJ cell
4
CD14-positive monocyte
4
CD4-positive, alpha-beta T cell
4
Caco-2 cell
4
GM06990
4
GM12864
4
GM12865
4
GM19240
4
HEK293
4
HL-60
4
HeLa-S3
4
IMR-90
4
KARPAS-422 cell
4
NAMALWA cell
4
NT2-D1 cell
4
Peyer's patch
4
Rh-4 cell
4
SK-N-MC
4
WERI-Rb-1
4
acute myeloid leukemia
4
alternatively activated macrophage
4
angular gyrus
4
aorta
4
ascending aorta
4
body of pancreas
4
chorion membrane
4
chorionic villus
4
colon epithelial cell
4
dermal fibroblast
4
endocrine pancreas
4
epithelial cell of prostate
4
fibroblast of dermis
4
fibroblast of mammary gland
4
fibroblast of pulmonary artery
4
fibroblast of villous mesenchyme
4
frontal cortex
4
glioblastoma multiforme cancer stem cell
4
glomerular visceral epithelial cell
4
kidney tubule cell
4
midbrain
4
mononuclear cell
4
pancreatic alpha cell
4
pancreatic delta cell
4
prostate cancer cell line
4
prostate gland
4
sigmoid colon
4
thyroid gland
4
trophoblast
4
upper lobe of left lung
3
cardiac fibroblast
3
22Rv1
3
Ammon's horn
3
CD1c-positive myeloid dendritic cell
3
CMK
3
Daoy
3
ECC-1
3
GM08714
3
GM10248
3
GM10266
3
GM12875
3
GM12891
3
GM12892
3
GM19238
3
GM19239
3
GM23248
3
HAC cell
3
HAP-1
3
HBMEC cell
3
HCT-116 cell
3
HT-29
3
HUES6
3
HuH-7
3
Jurkat
3
KBM-7
3
LHCN-M2
3
LoVo cell
3
MG63
3
MM.1S
3
NHEK
3
Normal Human Astrocytes
3
OCI-LY7
3
PANC-1 cell
3
PC-3
3
PC-9
3
RPMI8226
3
RS4-11 cell
3
RWPE1
3
SAEC
3
SJSA1
3
SK-N-DZ
3
SK-N-SH
3
SK-N-SH_RA
3
SUDHL5
3
SW480
3
T-47D cell
3
T-cell acute lymphoblastic leukemia
Organ
5
embryo
Life stage
2
embryonic
Date released
1
August, 2017
1
February, 2021
1
June, 2020
1
October, 2022
1
September, 2022
Software used
3
chromhmm
2
macs
Lab
4
AMP-T2D consortium
1
Stephen Parker, UMich
Project
5
AMP
RFA
5
AMP
Showing 5 of 5 results
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Download
FileSet
DSR876GWY
released
Annotation file set
: Binding sites annotation for H1-hESC (H1-hESC) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR002BRL
released
Annotation file set
: Chromatin states for BSS00478 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR188ZAX
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR165RXW
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR642714
released
Annotation file set
: ChromHMM 13-state model for H1
Lab:
Stephen Parker, UMich
Project:
AMP