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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
8
gene expression
2
binding sites
2
chromatin state
2
target gene predictions
1
accessible chromatin
1
candidate regulatory elements
1
histone modifications
Annotation Category
2
Target gene links
2
cis-regulatory elements
Annotation type Category
HiC
3
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
3
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
3
cell line
1
stem cell
Biosample term
40
heart
40
stomach
A549
34
brain
33
lung
32
muscle of arm
32
small intestine
31
adrenal gland
30
kidney
29
muscle of leg
29
placenta
27
common myeloid progenitor, CD34-positive
27
large intestine
26
left lung
26
muscle of back
25
thymus
23
CD14-positive monocyte
22
right lung
20
hematopoietic multipotent progenitor cell
20
right kidney
18
B cell
18
CD4-positive, alpha-beta memory T cell
18
left kidney
18
liver
18
renal cortex interstitium
18
renal pelvis
15
spinal cord
14
CD8-positive, alpha-beta memory T cell
14
K562
14
adipose tissue
14
heart left ventricle
14
spleen
12
adipocyte
12
mononuclear cell
12
sigmoid colon
12
trophoblast cell
11
MCF-7
11
pericyte cell
10
ovary
10
pituitary stalk
10
psoas muscle
9
body of pancreas
9
gastrocnemius medialis
9
heart right ventricle
9
muscle of trunk
9
neural progenitor cell
9
thyroid gland
9
transverse colon
8
T cell
8
chorionic villus
8
endocrine pancreas
8
endothelial cell of umbilical vein
8
fibroblast of lung
8
foreskin keratinocyte
8
keratinocyte
8
natural killer cell
8
smooth muscle cell
7
HeLa-S3
7
aorta
7
caudate nucleus
7
endothelial cell
7
fibroblast of cardiac tissue
7
fibroblast of dermis
7
layer of hippocampus
7
left cardiac atrium
7
mammary gland epithelial cell
7
mature neutrophil
7
mesenchymal stem cell
7
pancreas
7
regulatory T cell
7
temporal lobe
7
tibial nerve
6
CD4-positive, alpha-beta T cell
6
CD8-positive, alpha-beta T cell
6
Peyer's patch
6
T-helper 1 cell
6
T-helper 17 cell
6
T-helper 2 cell
6
angular gyrus
6
chorion membrane
6
coronary artery
6
dendritic cell
6
embryonic stem cell
6
endometrium adenocarcinoma
6
hepatocyte
6
immortal human breast epithelial cell line cell
6
naive T cell
6
neurosphere
6
retina
6
skeletal muscle myoblast
6
skeletal muscle tissue
6
testis
6
upper lobe of left lung
5
CD14-positive, CD16-negative classical monocyte
5
HepG2
5
SK-N-SH
5
alternatively activated macrophage
5
ascending aorta
5
astrocyte
5
breast epithelium
5
cingulate gyrus
5
colon epithelial cell
5
colonic mucosa
5
duodenal mucosa
5
epithelial cell of prostate
5
esophagus
5
foreskin fibroblast
5
mucosa of rectum
5
neutrophil
5
right cardiac atrium
5
skin fibroblast
5
stomach smooth muscle
5
substantia nigra
5
thoracic aorta
5
tibial artery
5
trophoblast
4
22Rv1
4
Brodmann (1909) area 46
4
GM12878
4
H1-hESC
4
KARPAS-422 cell
4
LNCaP clone FGC
4
NAMALWA cell
4
SK-N-DZ
4
T47D
4
bronchial epithelial cell
4
cerebellum
4
dermis blood vessel endothelial cell
4
dermis lymphatic vessel endothelial cell
4
endodermal cell
4
erythroblast
4
esophagus muscularis mucosa
4
esophagus squamous epithelium
4
eye
4
fibroblast
4
fibroblast of breast
4
frontal cortex
4
inflammatory macrophage
4
islet of Langerhans
4
kidney tubule cell
4
left renal cortex interstitium
4
left renal pelvis
4
limb
4
lower leg skin
4
luminal epithelial cell of mammary gland
4
macrophage
4
mesendoderm
4
muscle cell
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
omental fat pad
4
pancreatic delta cell
4
parathyroid adenoma
4
prostate gland
4
right atrium auricular region
4
right renal cortex interstitium
4
right renal pelvis
4
skeletal muscle satellite cell
4
tongue
4
urinary bladder
4
vagina
3
A673
3
Ammon's horn
3
H7-hESC
3
H9
3
HAP-1
3
HT-29
3
IMR-90
3
LoVo cell
3
MM.1S
3
OCI-LY7
3
PC-9
3
Panc1
3
bipolar neuron
3
cardiac muscle cell
3
germinal matrix
3
iPS DF 19.11
3
monocyte
3
osteoblast
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic ductal cell
3
rectum smooth muscle tissue
3
type B pancreatic cell
3
uterus
2
8988T
2
A172
2
ACC112
2
ACHN
2
AG04449 cell
2
AG04450 cell
2
AG08395 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
AG20443
Organ
4
embryo
Life stage
3
embryonic
Date released
2
September, 2022
1
August, 2017
1
May, 2021
Software used
2
chromhmm
1
abc
1
r
Lab
2
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
1
Stephen Parker, UMich
Project
4
AMP
RFA
4
AMP
biosample_term_name!
A549
annotation_type_category!
HiC
Showing 4 of 4 results
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Download
FileSet
DSR748AAQ
released
Annotation file set
: Target gene predictions for BSS00478 H1-hESC from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR002BRL
released
Annotation file set
: Chromatin states for BSS00478 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR922GBW
released
Annotation file set
: enhancer-gene predicton of H1-hESC-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
TSTSR642714
released
Annotation file set
: ChromHMM 13-state model for H1
Lab:
Stephen Parker, UMich
Project:
AMP