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Citing CMDGA
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Annotation type
1
accessible chromatin
1
target gene predictions
Annotation Category
1
Target gene links
1
cis-regulatory elements
Annotation type Category
37
HiC
8
RNA-seq
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
cell line
Biosample term
15
CD14-positive monocyte
10
pituitary stalk
6
dendritic cell
6
heart
6
pancreas
5
cardiac fibroblast
5
adipocyte
5
stomach
4
endothelial cell of umbilical vein
4
hepatocyte
4
kidney
4
osteoblast
4
skeletal muscle myoblast
3
B cell
3
CD4-positive helper T cell
3
CD8-positive, alpha-beta T cell
3
Jurkat
3
U937
3
adrenal gland
3
brain
3
brain pericyte
3
cardiac muscle cell
3
caudate nucleus
3
choroid plexus epithelial cell
3
coronary artery
3
frontal cortex
3
globus pallidus
3
glomerular endothelial cell
3
glomerular visceral epithelial cell
3
heart left ventricle
3
hepatic stellate cell
3
medulla oblongata
3
midbrain
3
monocyte
3
muscle of leg
3
occipital lobe
3
pons
3
putamen
3
renal cortical epithelial cell
3
renal pelvis
3
retina
3
right atrium auricular region
3
spinal cord
3
superior temporal gyrus
3
tibial artery
3
tibial nerve
3
trophoblast cell
2
hindlimb muscle
2
muscle of leg
2
A549
2
Ammon's horn
2
BJAB cell
2
GM12878
2
H1-hESC
2
H7-hESC
2
HAP-1
2
HCT-116 cell
2
HT-29
2
HepG2
2
IMR-90
2
K562
2
KARPAS-422 cell
2
LNCAP
2
LoVo cell
2
MCF 10A cell
2
MCF-7
2
MDA-MB-231 cell
2
MM.1S
2
NCCIT cell
2
OCI-LY7
2
PC-9
2
Rh-4 cell
2
T-cell
2
THP-1
2
acute myeloid leukemia cell
2
ascending aorta
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
bipolar neuron
2
body of pancreas
2
bone marrow cell
2
breast epithelium
2
epithelial cell of prostate
2
epithelial cell of proximal tubule
2
erythroid cell
2
fibroblast of cardiac tissue
2
foreskin fibroblast
2
gastrocnemius medialis
2
heart right ventricle
2
kidney capillary endothelial cell
2
kidney epithelial cell
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
large intestine
2
left cardiac atrium
2
left renal cortex interstitium
2
left renal pelvis
2
liver
2
macrophage
2
mammary epithelial cell
2
mesenchymal stem cell
2
mesendoderm
2
middle frontal gyrus
2
muscle of arm
2
natural killer cell
2
neuronal stem cell
2
ovary
2
pancreatic ductal cell
2
placenta
2
psoas muscle
2
regulatory T cell
2
renal cortex interstitium
2
retinal pigment epithelial cell
2
right kidney
2
right renal cortex interstitium
2
right renal pelvis
2
sigmoid colon
2
skeletal muscle cell
2
skin fibroblast
2
small intestine
2
smooth muscle cell of the brain vasculature
2
spleen
2
thymus
2
thyroid gland
2
transverse colon
2
uterus
1
brain microvascular endothelial cell
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
786-O cell
1
A-673 cell
1
A172
1
A673
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
B cell, CD19-positive
1
B-Lymphocytes
1
B-lymphocyte
1
BE(2)-C
1
BJ cell
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CD56-positive, CD161-positive immature natural killer cell
1
CMK
1
COLO-829 cell
1
COLO205
1
Caco-2 cell
1
Caki2
1
D341 Med cell
1
DG-75 cell
1
Daoy
1
ECC-1
1
G-401 cell
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM10248
1
GM10266
1
GM12864
1
GM12865
1
GM13976
1
GM13977
1
GM18507
1
GM19240
1
GM20000
1
GM23248
1
GP5d
1
Glioblastoma
1
H4
1
H9
1
HAC cell
1
HBMEC cell
1
HEK293
1
HGF
1
HL-60
1
HUES6
1
HUES8
1
HeLa cell
1
HeLa-S3
1
Hodgkin lymphoma cell line
1
HuH-7
1
HuTu-80 cell
1
Ishikawa
1
KBM-7
1
Kasumi-1
1
L-1236 cell
1
L-428 cell
1
L1-S8
1
L1-S8R
1
LHCN-M2
1
M059J
1
MCF10A-Er-Src cell
1
MG63
Organ
2
embryo
Date released
1
June, 2020
1
May, 2021
Software used
1
abc
1
macs
Lab
1
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
2
AMP
RFA
2
AMP
annotation_type_category!
ChIP-seq
Showing 2 of 2 results
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Download
FileSet
DSR922GBW
released
Annotation file set
: enhancer-gene predicton of H1-hESC-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR165RXW
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP