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Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
2
target gene predictions
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
1
histone modifications
Annotation Category
6
cis-regulatory elements
2
Target gene links
Annotation type Category
6
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
46
hg19
GRCh38
Organism
8
Homo sapiens
Biosample type
7
cell line
1
stem cell
Biosample term
66
heart
66
stomach
56
kidney
52
brain
51
lung
50
muscle of arm
48
CD8-positive, alpha-beta T cell
47
adrenal gland
47
small intestine
45
placenta
44
A549
43
large intestine
42
muscle of leg
41
muscle of back
39
left lung
39
liver
37
islet of Langerhans
37
thymus
35
retina
34
right lung
31
common myeloid progenitor, CD34-positive
31
monocyte
31
right kidney
30
hematopoietic multipotent progenitor cell
30
renal cortex interstitium
30
renal pelvis
28
B cell
27
left kidney
27
spinal cord
25
spleen
24
CD14-positive monocyte
24
neural progenitor cell
23
adipose tissue
22
EndoC_BH1
21
MCF-7
21
endothelial cell
21
heart left ventricle
20
adipocyte
20
breast cancer cell
20
pigmented layer of retina
20
regulatory T cell
19
K562
19
natural killer cell
18
embryonic stem cell
18
epithelial cell of proximal tubule
18
foreskin keratinocyte
17
foreskin fibroblast
17
sigmoid colon
17
trophoblast cell
16
T-helper 1 cell
16
glomerular endothelial cell
16
induced pluripotent stem cell
16
ovary
16
pancreatic ductal cell
15
body of pancreas
15
hepatocyte
15
psoas muscle
14
endothelial cell of umbilical vein
14
gastrocnemius medialis
14
mesenchymal stem cell
14
pancreas
14
tibial nerve
14
transverse colon
13
heart right ventricle
13
subcutaneous adipose tissue
13
testis
13
thyroid gland
13
upper lobe of left lung
12
cardiac muscle cell
12
layer of hippocampus
12
muscle of trunk
12
neuroblastoma cell
12
pancreatic alpha cell
12
pancreatic beta cell
11
caudate nucleus
11
chorionic villus
11
macrophage
11
mammary epithelial cell
11
mononuclear cell
11
pancreatic delta cell
10
CD4-positive, alpha-beta T cell
10
CD8-positive, alpha-beta memory T cell
10
HeLa-S3
10
HepG2
10
Peyer's patch
10
Rhabdomyosarcoma
10
T cell
10
gastric cancer cell
10
neuronal stem cell
10
pancreatic acinar cell
10
prostate gland
9
GM12878
9
H9
9
T-helper 2 cell
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
glomerular visceral epithelial cell
9
liposarcoma
9
neurosphere
9
skeletal muscle myoblast
9
smooth muscle cell
8
B-lymphoblastoid cell line
8
HEK293
8
aorta
8
breast epithelium
8
coronary artery
8
fibroblast
8
fibroblast cell line
8
keratinocyte
8
left renal cortex interstitium
8
mammary gland epithelial cell
8
omental fat pad
8
osteoblast
8
pituitary stalk
8
retinal pigment epithelial cell
8
right atrium auricular region
8
right renal pelvis
8
skeletal muscle tissue
8
temporal lobe
8
trophoblast
7
H1-hESC
7
HAP-1
7
HT-29
7
IMR-90
7
Jurkat
7
T-helper 17 cell
7
colonic mucosa
7
endocrine pancreas
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
fibroblast of cardiac tissue
7
fibroblast of lung
7
left renal pelvis
7
lower leg skin
7
mature neutrophil
7
mesendoderm
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
substantia nigra
7
tibial artery
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
Ammon's horn
6
BE(2)-C
6
BJ cell
6
CD4-positive, alpha-beta memory T cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
LNCAP
6
NAMALWA cell
6
SK-N-MC
6
cerebellum
6
chondrocyte
6
cingulate gyrus
6
endometrium adenocarcinoma
6
esophagus
6
eye
6
hESC cell
6
immortal human breast epithelial cell line cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuroblastoma cell line
6
neutrophil
6
occipital lobe
6
pancreatic stellate cell
6
parathyroid adenoma
6
right renal cortex interstitium
6
skin fibroblast
6
thoracic aorta
6
tongue
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Daoy
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
Organ
8
embryo
Life stage
unknown
3
embryonic
Date released
2
February, 2021
2
September, 2022
1
August, 2017
1
June, 2020
1
May, 2021
1
October, 2022
Software used
3
macs
2
chromhmm
2
r
1
abc
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
1
Stephen Parker, UMich
Project
8
AMP
RFA
8
AMP
assembly!
GRCh38
relevant_life_stage!
unknown
Showing 8 of 8 results
table-tab-icon
matrix-icon
Download
FileSet
DSR876GWY
released
Annotation file set
: Binding sites annotation for H1-hESC (H1-hESC) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR702NFK
released
Annotation file set
: Candidate regulatory elements for BSS00478 H1-hESC from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR748AAQ
released
Annotation file set
: Target gene predictions for BSS00478 H1-hESC from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR416QNM
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR188ZAX
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR922GBW
released
Annotation file set
: enhancer-gene predicton of H1-hESC-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR165RXW
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR642714
released
Annotation file set
: ChromHMM 13-state model for H1
Lab:
Stephen Parker, UMich
Project:
AMP