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Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
2
chromatin state
1
accessible chromatin
1
candidate regulatory elements
1
histone modifications
Annotation Category
Target gene links
7
cis-regulatory elements
Annotation type Category
6
ChIP-seq
2
DNase-seq
Available data
tsv
6
bed bed3+
1
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
6
cell line
1
stem cell
Biosample term
113
monocyte
67
heart
64
stomach
60
kidney
56
brain
51
muscle of arm
50
lung
46
small intestine
45
placenta
44
adrenal gland
44
muscle of leg
43
A549
43
CD8-positive, alpha-beta T cell
42
large intestine
41
muscle of back
40
common myeloid progenitor, CD34-positive
39
left lung
39
neural progenitor cell
37
liver
35
retina
34
right lung
34
thymus
33
islet of Langerhans
32
B cell
32
hematopoietic multipotent progenitor cell
32
right kidney
31
renal cortex interstitium
31
renal pelvis
27
fibroblast
27
left kidney
27
spinal cord
26
heart left ventricle
26
macrophage
24
endothelial cell
24
hepatocyte
24
spleen
23
CD4-positive, alpha-beta memory T cell
21
adipose tissue
20
breast cancer cell
20
pigmented layer of retina
19
MCF-7
19
adipocyte
18
K562
18
T cell
18
foreskin keratinocyte
16
embryonic stem cell
16
foreskin fibroblast
16
keratinocyte
16
pancreas
16
regulatory T cell
16
sigmoid colon
16
smooth muscle cell
16
tibial nerve
15
CD8-positive, alpha-beta memory T cell
15
cardiac muscle cell
15
endothelial cell of umbilical vein
15
natural killer cell
15
retinal pigment epithelial cell
15
trophoblast cell
14
HepG2
14
mesenchymal stem cell
14
skeletal muscle myoblast
13
EndoC_BH1
13
caudate nucleus
13
gastrocnemius medialis
13
heart right ventricle
13
mononuclear cell
13
testis
13
thyroid gland
13
upper lobe of left lung
12
CD14-positive monocyte
12
CD4-positive, alpha-beta T cell
12
coronary artery
12
excitatory neuron
12
layer of hippocampus
12
lymphoblastoid cell line
12
neuroblastoma cell
12
osteoblast
12
ovary
12
pancreatic ductal cell
12
pericyte cell
12
psoas muscle
12
skeletal muscle tissue
12
transverse colon
11
T-helper 1 cell
11
bronchial epithelial cell
11
endothelial cell of hepatic sinusoid
11
fibroblast of cardiac tissue
11
fibroblast of lung
11
mammary epithelial cell
11
mammary gland epithelial cell
11
neutrophil
11
prostate gland
11
skeletal muscle satellite cell
10
Rhabdomyosarcoma
10
T-helper 17 cell
10
astrocyte
10
body of pancreas
10
chorionic villus
10
gastric cancer cell
10
muscle of trunk
10
naive thymus-derived CD4-positive, alpha-beta T cell
10
pancreatic beta cell
10
right atrium auricular region
10
subcutaneous adipose tissue
10
substantia nigra
10
temporal lobe
10
tibial artery
9
HeLa-S3
9
Peyer's patch
9
T-helper 2 cell
9
choroid plexus epithelial cell
9
diffuse intrinsic pontine glioma
9
endocrine pancreas
9
esophagus muscularis mucosa
9
left cardiac atrium
9
left renal cortex interstitium
9
left renal pelvis
9
liposarcoma
9
neuronal stem cell
9
neurosphere
9
pancreatic acinar cell
8
22Rv1
8
GM12878
8
H9
8
HEK293
8
SK-N-DZ
8
esophagus squamous epithelium
8
fibroblast of dermis
8
kidney tubule cell
8
putamen
8
right renal pelvis
8
skeletal muscle fiber
7
B-lymphoblastoid cell line
7
GM06990
7
GM12864
7
GM12865
7
H1-hESC
7
IMR-90
7
aorta
7
ascending aorta
7
breast epithelium
7
cerebellum
7
colonic mucosa
epithelial cell of prostate
7
erythroblast
7
esophageal adenocarcinoma
7
fibroblast cell line
7
frontal cortex
7
hepatic stellate cell
7
mature neutrophil
7
omental fat pad
7
pancreatic alpha cell
7
pancreatic delta cell
7
right renal cortex interstitium
7
thoracic aorta
7
tongue
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM12875
6
GM19240
6
GM23248
6
HL-60
6
HT-29
6
KARPAS-422 cell
6
SW480
6
angular gyrus
6
chondrocyte
6
cingulate gyrus
6
dermis blood vessel endothelial cell
6
duodenal mucosa
6
endodermal cell
6
esophagus
6
fibroblast of villous mesenchyme
6
foreskin melanocyte
6
globus pallidus
6
glomerular endothelial cell
6
hESC cell
6
induced pluripotent stem cell
6
lower leg skin
6
mesodermal cell
6
midbrain
6
neuroblastoma cell line
6
skin fibroblast
6
trophoblast
5
cardiac fibroblast
5
Ammon's horn
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
Daoy
5
Ewing sarcoma
Organ
7
embryo
Life stage
3
embryonic
Date released
2
February, 2021
2
September, 2022
1
August, 2017
1
June, 2020
1
October, 2022
Software used
3
chromhmm
3
macs
1
r
Lab
6
AMP-T2D consortium
1
Stephen Parker, UMich
Project
7
AMP
RFA
7
AMP
biosample_term_name!
epithelial cell of prostate
annotation_category!
Target gene links
files.file_type!
tsv
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR876GWY
released
Annotation file set
: Binding sites annotation for H1-hESC (H1-hESC) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR702NFK
released
Annotation file set
: Candidate regulatory elements for BSS00478 H1-hESC from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR002BRL
released
Annotation file set
: Chromatin states for BSS00478 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR416QNM
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR188ZAX
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR165RXW
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR642714
released
Annotation file set
: ChromHMM 13-state model for H1
Lab:
Stephen Parker, UMich
Project:
AMP