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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
3
DNase-seq
Available data
3
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
cell line
Biosample term
60
stomach
59
heart
55
A549
49
brain
48
lung
48
muscle of arm
46
small intestine
43
adrenal gland
43
kidney
43
placenta
40
muscle of leg
39
common myeloid progenitor, CD34-positive
39
large intestine
39
left lung
39
muscle of back
34
right lung
34
thymus
31
hematopoietic multipotent progenitor cell
30
right kidney
28
renal pelvis
27
CD4-positive, alpha-beta memory T cell
27
left kidney
27
renal cortex interstitium
26
B cell
23
spinal cord
22
liver
21
CD8-positive, alpha-beta memory T cell
19
K562
19
spleen
18
adipose tissue
18
mononuclear cell
16
MCF-7
16
sigmoid colon
16
trophoblast cell
15
heart left ventricle
13
T cell
13
foreskin keratinocyte
13
gastrocnemius medialis
13
ovary
13
psoas muscle
13
thyroid gland
13
transverse colon
12
CD14-positive monocyte
12
body of pancreas
12
chorionic villus
12
endocrine pancreas
12
muscle of trunk
12
neural progenitor cell
11
fibroblast of cardiac tissue
11
regulatory T cell
10
Peyer's patch
10
T-helper 1 cell
10
caudate nucleus
10
chorion membrane
10
mammary gland epithelial cell
10
natural killer cell
10
retina
10
testis
10
tibial nerve
10
upper lobe of left lung
9
HeLa-S3
9
T-helper 17 cell
9
T-helper 2 cell
9
endometrium adenocarcinoma
9
fibroblast of dermis
9
fibroblast of lung
9
heart right ventricle
9
immortal human breast epithelial cell line cell
9
layer of hippocampus
9
naive T cell
9
neurosphere
9
skeletal muscle tissue
8
HepG2
8
pancreas
8
skin fibroblast
7
NAMALWA cell
7
SK-N-DZ
7
adipocyte
7
breast epithelium
7
bronchial epithelial cell
7
endothelial cell of umbilical vein
epithelial cell of prostate
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
eye
7
foreskin fibroblast
7
frontal cortex
7
hepatocyte
7
kidney tubule cell
7
limb
7
mesenchymal stem cell
7
prostate gland
7
right atrium auricular region
7
skeletal muscle myoblast
7
tibial artery
7
tongue
7
trophoblast
7
urinary bladder
6
22Rv1
6
Brodmann (1909) area 46
6
LNCaP clone FGC
6
SK-N-SH
6
T47D
6
angular gyrus
6
aorta
6
ascending aorta
6
cerebellum
6
cingulate gyrus
6
colonic mucosa
6
coronary artery
6
dermis blood vessel endothelial cell
6
dermis lymphatic vessel endothelial cell
6
duodenal mucosa
6
endodermal cell
6
esophagus
6
fibroblast of breast
6
keratinocyte
6
left renal cortex interstitium
6
left renal pelvis
6
lower leg skin
6
mucosa of rectum
6
muscle cell
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
neutrophil
6
omental fat pad
6
parathyroid adenoma
6
right renal cortex interstitium
6
right renal pelvis
6
stomach smooth muscle
6
substantia nigra
6
temporal lobe
6
thoracic aorta
6
vagina
5
osteoblast
4
A172
4
ACHN
4
AG04449 cell
4
AG04450 cell
4
AG08396 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
Ammon's horn
4
BE(2)-C
4
BJ cell
4
CD1c-positive myeloid dendritic cell
4
CMK
4
Caco-2 cell
4
Caki2
4
Daoy
4
GM03348
4
GM04503
4
GM04504
4
GM06990
4
GM10248
4
GM10266
4
GM12864
4
GM12865
4
GM12878
4
GM18507
4
GM19240
4
GM23248
4
H1-hESC
4
H4
4
H7-hESC
4
HAP-1
4
HEK293
4
HL-60
4
HT-29
4
HUES6
4
HuH-7
4
IMR-90
4
KARPAS-422 cell
4
KBM-7
4
L1-S8
4
L1-S8R
4
LHCN-M2
4
LoVo cell
4
M059J
4
MG63
4
MM.1S
4
NCI-H226 cell
4
NT2-D1 cell
4
OCI-LY7
4
PC-3
4
PC-9
4
RCC 7860
4
RPMI7951
4
RPMI8226
4
RWPE1
4
SJCRH30
4
SJSA1
4
SK-N-MC
4
SW480
4
WERI-Rb-1
4
bipolar neuron
4
choroid plexus epithelial cell
4
embryonic facial prominence
Organ
4
embryo
Life stage
3
embryonic
Date released
37
February, 2024
8
August, 2021
3
September, 2022
2
February, 2021
1
August, 2017
1
June, 2020
1
May, 2021
1
October, 2022
Software used
2
r
1
chromhmm
1
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
biosample_term_name!
epithelial cell of prostate
Showing 4 of 4 results
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Download
FileSet
DSR702NFK
released
Annotation file set
: Candidate regulatory elements for BSS00478 H1-hESC from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR748AAQ
released
Annotation file set
: Target gene predictions for BSS00478 H1-hESC from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR002BRL
released
Annotation file set
: Chromatin states for BSS00478 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR165RXW
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP