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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
accessible chromatin
2
candidate regulatory elements
1
variant allelic effects
Annotation Category
4
cis-regulatory elements
3
Target gene links
1
Genetic variant effects
Annotation type Category
37
HiC
10
ChIP-seq
9
RNA-seq
8
DNase-seq
2
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
7
bed bed3+
File set status
8
released
Genome assembly (visualization)
7
hg19
Organism
8
Homo sapiens
Biosample type
4
cell line
4
primary cell
Biosample term
44
heart
43
stomach
38
A549
35
brain
34
muscle of arm
32
kidney
32
lung
32
small intestine
31
adrenal gland
30
placenta
29
muscle of leg
28
large intestine
27
common myeloid progenitor, CD34-positive
26
left lung
26
muscle of back
24
thymus
23
CD14-positive monocyte
23
right lung
22
right kidney
21
hematopoietic multipotent progenitor cell
21
renal pelvis
20
renal cortex interstitium
19
B cell
18
CD4-positive, alpha-beta memory T cell
18
left kidney
17
spinal cord
16
liver
14
CD8-positive, alpha-beta memory T cell
14
K562
14
spleen
13
adipose tissue
13
heart left ventricle
13
trophoblast cell
12
MCF-7
12
mononuclear cell
12
sigmoid colon
10
body of pancreas
10
gastrocnemius medialis
10
ovary
10
pancreas
10
pituitary stalk
10
psoas muscle
10
thyroid gland
10
transverse colon
9
T cell
9
adipocyte
9
caudate nucleus
9
foreskin keratinocyte
9
muscle of trunk
9
retina
9
tibial nerve
8
chorionic villus
8
endocrine pancreas
8
endothelial cell of umbilical vein
8
fibroblast of cardiac tissue
8
heart right ventricle
8
hepatocyte
8
natural killer cell
8
neural progenitor cell
8
regulatory T cell
8
skeletal muscle myoblast
7
HeLa-S3
7
Peyer's patch
7
T-helper 1 cell
7
chorion membrane
7
coronary artery
7
fibroblast of dermis
7
fibroblast of lung
7
frontal cortex
7
mammary gland epithelial cell
7
right atrium auricular region
7
testis
7
tibial artery
7
upper lobe of left lung
6
T-helper 17 cell
6
T-helper 2 cell
6
ascending aorta
6
breast epithelium
6
dendritic cell
6
endometrium adenocarcinoma
6
epithelial cell of prostate
6
foreskin fibroblast
6
immortal human breast epithelial cell line cell
6
kidney tubule cell
6
layer of hippocampus
6
left renal cortex interstitium
6
left renal pelvis
6
mesenchymal stem cell
6
naive T cell
6
neurosphere
6
osteoblast
6
right renal cortex interstitium
6
right renal pelvis
6
skeletal muscle tissue
6
skin fibroblast
5
cardiac fibroblast
5
NAMALWA cell
5
SK-N-DZ
5
SK-N-SH
5
bronchial epithelial cell
5
cardiac muscle cell
5
cerebellum
5
choroid plexus epithelial cell
5
esophagus muscularis mucosa
5
esophagus squamous epithelium
5
eye
5
globus pallidus
5
glomerular endothelial cell
5
glomerular visceral epithelial cell
5
hepatic stellate cell
5
keratinocyte
5
limb
5
medulla oblongata
5
midbrain
5
occipital lobe
5
omental fat pad
5
pons
5
prostate gland
5
putamen
5
renal cortical epithelial cell
5
superior temporal gyrus
5
tongue
5
trophoblast
5
urinary bladder
4
22Rv1
4
Ammon's horn
4
Brodmann (1909) area 46
4
GM12878
4
H1-hESC
4
H7-hESC
4
HAP-1
4
HT-29
4
HepG2
4
IMR-90
4
KARPAS-422 cell
4
LNCaP clone FGC
4
LoVo cell
4
MM.1S
4
OCI-LY7
4
PC-9
4
T47D
4
angular gyrus
4
aorta
4
astrocyte of the cerebellum
4
astrocyte of the hippocampus
4
bipolar neuron
4
cingulate gyrus
4
colonic mucosa
4
dermis blood vessel endothelial cell
4
dermis lymphatic vessel endothelial cell
4
duodenal mucosa
4
endodermal cell
4
epithelial cell of proximal tubule
4
esophagus
4
fibroblast of breast
4
kidney capillary endothelial cell
4
kidney epithelial cell
4
kidney glomerular epithelial cell
4
left cardiac atrium
4
lower leg skin
4
mesendoderm
4
middle frontal gyrus
4
mucosa of rectum
4
muscle cell
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
neutrophil
4
parathyroid adenoma
4
retinal pigment epithelial cell
4
skeletal muscle cell
4
smooth muscle cell of the brain vasculature
4
stomach smooth muscle
4
substantia nigra
4
temporal lobe
4
thoracic aorta
4
uterus
4
vagina
3
A172
3
A673
3
ACHN
3
AG04449 cell
3
AG04450 cell
3
AG08396 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
BE(2)-C
3
BJ cell
3
CD1c-positive myeloid dendritic cell
3
CD4-positive helper T cell
3
CD8-positive, alpha-beta T cell
3
CMK
3
Caco-2 cell
3
Caki2
3
Daoy
3
GM03348
3
GM04503
3
GM04504
3
GM06990
Organ
4
embryo
4
epithelium
4
kidney
Life stage
3
adult
2
embryonic
Date released
4
September, 2022
2
June, 2020
1
May, 2020
1
May, 2021
Software used
4
r
2
macs
1
abc
1
deltasvm
encode-ccres
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
software_used.software.name!
encode-ccres
Showing 8 of 8 results
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Download
FileSet
DSR601HVF
released
Annotation file set
: Candidate regulatory elements for BSS01092 kidney glomerular epithelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR702NFK
released
Annotation file set
: Candidate regulatory elements for BSS00478 H1-hESC from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR154FEG
released
Annotation file set
: Target gene predictions for BSS01092 kidney glomerular epithelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR748AAQ
released
Annotation file set
: Target gene predictions for BSS00478 H1-hESC from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR922GBW
released
Annotation file set
: enhancer-gene predicton of H1-hESC-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR165RXW
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR317RFI
released
Annotation file set
: Accessible chromatin annotation for Kidney Kidney glomerular epithelial cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR299RQY
released
Annotation file set
: Variant allelic effects of kidney glomerular epithelial cell ENCODE DHSseq
Lab:
AMP-T2D consortium
Project:
AMP