Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
2
chromatin state
1
accessible chromatin
1
candidate regulatory elements
1
histone modifications
Annotation Category
Target gene links
7
cis-regulatory elements
Annotation type Category
6
ChIP-seq
2
DNase-seq
Available data
6
bed bed3+
1
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
6
cell line
1
stem cell
Biosample term
128
monocyte
69
heart
65
stomach
59
kidney
57
brain
51
lung
51
muscle of arm
46
small intestine
45
CD8-positive, alpha-beta T cell
45
adrenal gland
45
placenta
44
muscle of leg
43
A549
42
large intestine
41
muscle of back
40
common myeloid progenitor, CD34-positive
39
left lung
37
retina
36
islet of Langerhans
34
B cell
34
right lung
34
thymus
33
hematopoietic multipotent progenitor cell
33
liver
32
right kidney
31
renal cortex interstitium
31
renal pelvis
30
endothelial cell
30
hepatocyte
27
fibroblast
27
heart left ventricle
27
left kidney
27
macrophage
27
spinal cord
25
spleen
24
regulatory T cell
23
CD4-positive, alpha-beta memory T cell
22
EndoC_BH1
22
pancreatic ductal cell
22
tibial nerve
21
adipose tissue
21
epithelial cell of proximal tubule
20
adipocyte
20
breast cancer cell
20
pigmented layer of retina
19
MCF-7
19
T-helper 1 cell
19
body of pancreas
19
caudate nucleus
19
glomerular endothelial cell
18
K562
18
T cell
18
foreskin keratinocyte
18
subcutaneous adipose tissue
17
T-helper 17 cell
17
coronary artery
17
embryonic stem cell
17
right atrium auricular region
17
smooth muscle cell
16
endothelial cell of hepatic sinusoid
16
foreskin fibroblast
16
keratinocyte
16
natural killer cell
16
pancreas
16
sigmoid colon
16
substantia nigra
16
tibial artery
15
CD8-positive, alpha-beta memory T cell
15
cardiac muscle cell
15
endothelial cell of umbilical vein
15
induced pluripotent stem cell
15
osteoblast
15
pancreatic beta cell
15
retinal pigment epithelial cell
15
trophoblast cell
14
frontal cortex
14
mesenchymal stem cell
neural progenitor cell
14
omental fat pad
14
pancreatic acinar cell
14
skeletal muscle myoblast
14
testis
13
HepG2
13
T-helper 2 cell
13
cerebellum
13
excitatory neuron
13
gastrocnemius medialis
13
heart right ventricle
13
mononuclear cell
13
ovary
13
pancreatic alpha cell
13
putamen
13
thyroid gland
13
upper lobe of left lung
12
CD14-positive monocyte
12
CD4-positive, alpha-beta T cell
12
ascending aorta
12
astrocyte
12
layer of hippocampus
12
lymphoblastoid cell line
12
neuroblastoma cell
12
pericyte cell
12
psoas muscle
12
skeletal muscle tissue
12
temporal lobe
12
transverse colon
11
bronchial epithelial cell
11
fibroblast of cardiac tissue
11
fibroblast of lung
11
mammary epithelial cell
11
mammary gland epithelial cell
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
neutrophil
11
prostate gland
11
skeletal muscle satellite cell
10
Ammon's horn
10
Rhabdomyosarcoma
10
chorionic villus
10
gastric cancer cell
10
muscle of trunk
10
pancreatic delta cell
10
progenitor cell of endocrine pancreas
9
Peyer's patch
9
cardiomyocytes
9
choroid plexus epithelial cell
9
diffuse intrinsic pontine glioma
9
endocrine pancreas
9
esophagus muscularis mucosa
9
glomerular visceral epithelial cell
9
hepatic stellate cell
9
left cardiac atrium
9
left renal cortex interstitium
9
left renal pelvis
9
liposarcoma
9
neuronal stem cell
9
neurosphere
8
22Rv1
8
SK-N-DZ
8
esophagus squamous epithelium
8
fibroblast of dermis
8
kidney tubule cell
8
pancreatic stellate cell
8
right renal pelvis
8
skeletal muscle fiber
7
B-lymphoblastoid cell line
7
GM12865
7
GM12878
7
HeLa-S3
7
IMR-90
7
amygdala
7
aorta
7
breast epithelium
7
colonic mucosa
7
epithelial cell of prostate
7
erythroblast
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
fibroblast cell line
7
mature neutrophil
7
right lobe of liver
7
right renal cortex interstitium
7
thoracic aorta
7
tongue
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM12864
6
H9
6
HEK293
6
SW480
6
angular gyrus
6
anterior cingulate cortex
6
chondrocyte
6
cingulate gyrus
6
dermis blood vessel endothelial cell
6
duodenal mucosa
6
endodermal cell
6
esophagus
6
fibroblast of villous mesenchyme
6
foreskin melanocyte
6
globus pallidus
6
hESC cell
6
hypothalamus
6
lower leg skin
6
mesodermal cell
6
midbrain
6
neuroblastoma cell line
6
nucleus accumbens
6
skin fibroblast
6
trophoblast
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
Organ
7
embryo
Life stage
3
embryonic
Date released
August, 2021
2
February, 2021
2
September, 2022
1
August, 2017
1
June, 2020
1
October, 2022
Software used
3
chromhmm
3
macs
1
r
Lab
6
AMP-T2D consortium
1
Stephen Parker, UMich
Project
7
AMP
RFA
7
AMP
month_released!
August, 2021
biosample_term_name!
neural progenitor cell
annotation_category!
Target gene links
Showing 7 of 7 results
table-tab-icon
matrix-icon
Download
FileSet
DSR876GWY
released
Annotation file set
: Binding sites annotation for H1-hESC (H1-hESC) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR702NFK
released
Annotation file set
: Candidate regulatory elements for BSS00478 H1-hESC from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR002BRL
released
Annotation file set
: Chromatin states for BSS00478 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR416QNM
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR188ZAX
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR165RXW
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR642714
released
Annotation file set
: ChromHMM 13-state model for H1
Lab:
Stephen Parker, UMich
Project:
AMP