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Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
2
chromatin state
1
candidate regulatory elements
histone modifications
Annotation Category
39
Target gene links
8
Gene expression levels
5
cis-regulatory elements
Annotation type Category
5
ChIP-seq
1
DNase-seq
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
4
cell line
1
stem cell
Biosample term
62
heart
59
stomach
55
kidney
50
muscle of arm
49
brain
49
lung
44
small intestine
43
muscle of leg
42
adrenal gland
41
A549
41
muscle of back
41
placenta
40
common myeloid progenitor, CD34-positive
40
large intestine
39
left lung
33
right lung
32
retina
32
thymus
31
right kidney
30
hematopoietic multipotent progenitor cell
30
renal cortex interstitium
29
renal pelvis
28
B cell
27
left kidney
26
liver
23
CD4-positive, alpha-beta memory T cell
23
neural progenitor cell
23
spinal cord
22
heart left ventricle
22
spleen
20
pigmented layer of retina
18
fibroblast
17
MCF-7
17
endothelial cell
17
monocyte
16
K562
16
adipocyte
16
adipose tissue
16
foreskin keratinocyte
15
CD8-positive, alpha-beta memory T cell
15
sigmoid colon
14
T cell
14
embryonic stem cell
13
endothelial cell of umbilical vein
13
hepatocyte
13
macrophage
13
mononuclear cell
13
retinal pigment epithelial cell
13
trophoblast cell
12
CD14-positive monocyte
12
CD4-positive, alpha-beta T cell
12
CD8-positive, alpha-beta T cell
12
body of pancreas
12
cardiac muscle cell
12
chorionic villus
12
excitatory neuron
12
foreskin fibroblast
12
pericyte cell
11
T-helper 1 cell
11
astrocyte
11
endothelial cell of hepatic sinusoid
11
fibroblast of lung
11
gastrocnemius medialis
11
heart right ventricle
11
keratinocyte
11
smooth muscle cell
11
thyroid gland
11
tibial nerve
11
upper lobe of left lung
10
Peyer's patch
10
T-helper 17 cell
10
T-helper 2 cell
10
islet of Langerhans
10
layer of hippocampus
10
muscle of trunk
10
ovary
10
pancreas
10
psoas muscle
10
regulatory T cell
10
skeletal muscle myoblast
10
testis
9
EndoC_BH1
9
HeLa-S3
9
breast cancer cell
9
caudate nucleus
9
coronary artery
9
endocrine pancreas
9
natural killer cell
9
neurosphere
9
skeletal muscle tissue
9
temporal lobe
9
transverse colon
8
H9
8
HepG2
8
angular gyrus
8
aorta
8
ascending aorta
8
bronchial epithelial cell
8
fibroblast of cardiac tissue
8
fibroblast of dermis
8
left cardiac atrium
8
left renal cortex interstitium
8
mammary gland epithelial cell
8
mesenchymal stem cell
8
pancreatic beta cell
8
skeletal muscle satellite cell
7
22Rv1
7
SK-N-SH
7
breast epithelium
7
colonic mucosa
7
dermis blood vessel endothelial cell
7
duodenal mucosa
7
erythroblast
7
esophagus squamous epithelium
7
left renal pelvis
7
omental fat pad
7
osteoblast
7
pancreatic acinar cell
7
right renal pelvis
7
substantia nigra
7
tibial artery
6
GM12878
6
HEK293
6
SK-N-DZ
6
WI38
6
cerebellum
6
chondrocyte
6
chorion membrane
6
choroid plexus epithelial cell
6
cingulate gyrus
6
fibroblast cell line
6
kidney tubule cell
6
lower leg skin
6
mammary epithelial cell
6
neutrophil
6
pancreatic ductal cell
6
right renal cortex interstitium
6
thoracic aorta
5
CD14-positive, CD16-negative classical monocyte
5
GM06990
5
GM08714
5
GM12864
5
GM12865
5
GM12875
5
H1-hESC
5
HL-60
5
IMR-90
5
LNCaP clone FGC
5
NAMALWA cell
5
SGBS preadipocytes
5
SK-N-MC
5
T47D
5
WERI-Rb-1
5
dermis lymphatic vessel endothelial cell
5
esophagus
5
esophagus muscularis mucosa
5
fibroblast of breast
5
immortal human breast epithelial cell line cell
5
mature neutrophil
5
muscle layer of duodenum
5
myoepithelial cell of mammary gland
5
parathyroid adenoma
5
prostate gland
5
skin fibroblast
5
stomach smooth muscle
5
tongue
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
Ammon's horn
4
BE(2)-C
4
BJ cell
4
Brodmann (1909) area 46
4
CD1c-positive myeloid dendritic cell
4
CMK
4
Caco-2 cell
4
Daoy
4
GM10248
4
GM10266
4
GM12891
4
GM12892
4
GM19238
4
GM19239
4
GM19240
4
GM23248
4
HAP-1
4
HT-29
4
HUES6
4
HUES64
4
KARPAS-422 cell
4
KBM-7
4
LHCN-M2
4
MG63
4
MM.1S
4
NB4
4
NT2-D1 cell
4
OCI-LY1
4
OCI-LY3
Organ
5
embryo
Life stage
3
embryonic
Date released
2
September, 2022
1
August, 2017
1
February, 2021
June, 2020
1
October, 2022
Software used
3
chromhmm
1
macs
1
r
Lab
4
AMP-T2D consortium
1
Stephen Parker, UMich
Project
5
AMP
RFA
5
AMP
month_released!
June, 2020
annotation_type!
histone modifications
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR876GWY
released
Annotation file set
: Binding sites annotation for H1-hESC (H1-hESC) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR702NFK
released
Annotation file set
: Candidate regulatory elements for BSS00478 H1-hESC from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR002BRL
released
Annotation file set
: Chromatin states for BSS00478 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR188ZAX
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR642714
released
Annotation file set
: ChromHMM 13-state model for H1
Lab:
Stephen Parker, UMich
Project:
AMP