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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
2
chromatin state
1
accessible chromatin
1
histone modifications
Annotation Category
38
Target gene links
6
cis-regulatory elements
Annotation type Category
5
ChIP-seq
1
DNase-seq
Available data
5
bed bed3+
1
bed bed9
File set status
6
released
Genome assembly (visualization)
6
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
5
cell line
1
stem cell
Biosample term
105
monocyte
46
heart
44
kidney
44
stomach
43
CD8-positive, alpha-beta T cell
37
brain
35
neural progenitor cell
34
muscle of arm
33
lung
31
muscle of leg
31
retina
30
placenta
30
small intestine
29
adrenal gland
29
large intestine
28
muscle of back
27
common myeloid progenitor, CD34-positive
26
left lung
25
A549
24
B cell
23
right lung
23
thymus
22
hematopoietic multipotent progenitor cell
21
renal cortex interstitium
21
renal pelvis
21
right kidney
20
breast cancer cell
20
fibroblast
20
liver
20
pigmented layer of retina
19
spinal cord
18
endothelial cell
18
heart left ventricle
18
left kidney
17
spleen
16
embryonic stem cell
16
hepatocyte
15
MCF-7
15
macrophage
14
CD4-positive, alpha-beta memory T cell
14
adipocyte
14
foreskin fibroblast
14
retinal pigment epithelial cell
13
HepG2
13
foreskin keratinocyte
13
keratinocyte
12
CD4-positive, alpha-beta T cell
12
K562
12
T cell
12
cardiac muscle cell
12
endothelial cell of umbilical vein
12
excitatory neuron
12
neuroblastoma cell
12
pancreas
11
endothelial cell of hepatic sinusoid
11
islet of Langerhans
11
mammary epithelial cell
11
natural killer cell
11
osteoblast
11
pericyte cell
10
EndoC_BH1
10
Rhabdomyosarcoma
10
gastric cancer cell
10
pancreatic ductal cell
10
regulatory T cell
10
sigmoid colon
10
skeletal muscle myoblast
10
smooth muscle cell
9
adipose tissue
9
astrocyte
9
bronchial epithelial cell
9
diffuse intrinsic pontine glioma
9
liposarcoma
9
neuronal stem cell
9
testis
9
tibial nerve
9
trophoblast cell
9
upper lobe of left lung
8
CD14-positive monocyte
8
CD8-positive, alpha-beta memory T cell
8
Peyer's patch
8
fibroblast of lung
8
heart right ventricle
8
left cardiac atrium
8
mesenchymal stem cell
8
pancreatic beta cell
7
B-lymphoblastoid cell line
7
GM12878
7
H9
7
HEK293
7
T-helper 1 cell
7
caudate nucleus
7
coronary artery
7
erythroblast
7
esophageal adenocarcinoma
7
fibroblast cell line
7
fibroblast of cardiac tissue
7
gastrocnemius medialis
7
layer of hippocampus
7
left renal pelvis
7
mature neutrophil
7
muscle of trunk
7
ovary
7
pancreatic acinar cell
7
skeletal muscle satellite cell
7
substantia nigra
7
temporal lobe
7
tibial artery
6
22Rv1
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
GM12865
6
H1-hESC
6
HL-60
6
HeLa-S3
6
IMR-90
6
Rh-4 cell
6
SGBS preadipocytes
6
chondrocyte
6
choroid plexus epithelial cell
6
foreskin melanocyte
6
hESC cell
6
mammary gland epithelial cell
6
mononuclear cell
6
neuroblastoma cell line
6
prostate gland
6
psoas muscle
6
skeletal muscle tissue
6
thyroid gland
6
transverse colon
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
BE(2)-C
5
BJ cell
5
CD14-positive, CD16-negative classical monocyte
5
CD1c-positive myeloid dendritic cell
5
CMK
5
Caco-2 cell
5
Ewing sarcoma
5
GM12875
5
GM19240
5
GM23248
5
HAP-1
5
HT-29
5
Jurkat
5
KARPAS-422 cell
5
LHCN-M2
5
LNCAP
5
MG63
5
MM.1S
5
OCI-LY7
5
PC-3
5
PC-9
5
RPMI8226
5
SK-N-MC
5
SW480
5
T-helper 2 cell
5
acute myeloid leukemia
5
body of pancreas
5
chorionic villus
5
dermis blood vessel endothelial cell
5
epithelial cell of prostate
5
esophagus squamous epithelium
5
hepatic stellate cell
5
left renal cortex interstitium
5
lymphoblastoid cell line
5
midbrain
5
neurosphere
5
omental fat pad
5
osteosarcoma
5
prostate cancer cell line
5
trophoblast
4
Ammon's horn
4
B-lymphocyte
4
COLO205
4
Daoy
4
GM08714
4
GM10248
4
GM10266
4
GM12873
4
GM12891
4
GM12892
4
GM19238
4
GM19239
4
HAC cell
4
HBMEC cell
4
HCT-116 cell
4
HS-SY-2 cell
4
HUES6
4
HuH-7
4
Ishikawa
4
KBM-7
4
LoVo cell
4
Mantle cell lymphoma
4
NAMALWA cell
4
NHEK
Organ
6
embryo
Life stage
2
embryonic
Date released
2
February, 2021
1
August, 2017
1
June, 2020
1
October, 2022
1
September, 2022
Software used
3
chromhmm
3
macs
r
Lab
5
AMP-T2D consortium
1
Stephen Parker, UMich
Project
6
AMP
RFA
6
AMP
software_used.software.name!
r
Showing 6 of 6 results
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Download
FileSet
DSR876GWY
released
Annotation file set
: Binding sites annotation for H1-hESC (H1-hESC) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR002BRL
released
Annotation file set
: Chromatin states for BSS00478 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR416QNM
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR188ZAX
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR165RXW
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR642714
released
Annotation file set
: ChromHMM 13-state model for H1
Lab:
Stephen Parker, UMich
Project:
AMP