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Schema
Citing CMDGA
Clear Filters
Annotation type
target gene predictions
2
binding sites
2
chromatin state
1
accessible chromatin
1
histone modifications
Annotation Category
6
cis-regulatory elements
Annotation type Category
5
ChIP-seq
1
DNase-seq
Available data
5
bed bed3+
1
bed bed9
File set status
6
released
Genome assembly (visualization)
6
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
5
cell line
1
stem cell
Biosample term
113
monocyte
48
heart
46
kidney
45
stomach
43
CD8-positive, alpha-beta T cell
40
brain
35
muscle of arm
35
neural progenitor cell
34
lung
33
retina
31
islet of Langerhans
31
muscle of leg
31
placenta
31
small intestine
30
adrenal gland
29
large intestine
29
liver
28
muscle of back
27
common myeloid progenitor, CD34-positive
27
fibroblast
26
left lung
26
macrophage
25
A549
24
B cell
23
endothelial cell
23
hepatocyte
23
right lung
23
thymus
22
hematopoietic multipotent progenitor cell
22
renal cortex interstitium
22
renal pelvis
22
right kidney
21
heart left ventricle
20
breast cancer cell
20
pigmented layer of retina
20
spinal cord
18
left kidney
18
spleen
17
tibial nerve
16
adipocyte
16
embryonic stem cell
16
endothelial cell of hepatic sinusoid
16
subcutaneous adipose tissue
15
MCF-7
15
T cell
15
adipose tissue
15
caudate nucleus
14
CD4-positive, alpha-beta memory T cell
14
EndoC_BH1
14
cardiac muscle cell
14
coronary artery
14
foreskin fibroblast
14
keratinocyte
14
retinal pigment epithelial cell
14
smooth muscle cell
13
HepG2
13
endothelial cell of umbilical vein
13
foreskin keratinocyte
13
pancreas
13
regulatory T cell
13
tibial artery
12
CD4-positive, alpha-beta T cell
12
K562
12
body of pancreas
12
excitatory neuron
12
lymphoblastoid cell line
12
natural killer cell
12
neuroblastoma cell
12
putamen
12
right atrium auricular region
12
substantia nigra
11
mammary epithelial cell
11
omental fat pad
11
osteoblast
11
pancreatic ductal cell
11
pericyte cell
11
skeletal muscle myoblast
10
Rhabdomyosarcoma
10
gastric cancer cell
10
heart right ventricle
10
mesenchymal stem cell
10
naive thymus-derived CD4-positive, alpha-beta T cell
10
sigmoid colon
10
testis
9
ascending aorta
9
astrocyte
9
bronchial epithelial cell
9
diffuse intrinsic pontine glioma
9
frontal cortex
9
layer of hippocampus
9
left cardiac atrium
9
liposarcoma
9
neuronal stem cell
9
neutrophil
9
pancreatic beta cell
9
trophoblast cell
9
upper lobe of left lung
8
Ammon's horn
8
CD14-positive monocyte
8
CD8-positive, alpha-beta memory T cell
8
cerebellum
8
fibroblast of lung
8
ovary
8
pancreatic acinar cell
8
prostate gland
8
skeletal muscle tissue
8
thyroid gland
8
transverse colon
7
B-lymphoblastoid cell line
7
GM12878
7
H9
7
HEK293
7
Peyer's patch
7
T-helper 1 cell
7
choroid plexus epithelial cell
7
erythroblast
7
esophageal adenocarcinoma
7
fibroblast cell line
7
fibroblast of cardiac tissue
7
gastrocnemius medialis
7
left renal cortex interstitium
7
left renal pelvis
7
mammary gland epithelial cell
7
mature neutrophil
7
muscle of trunk
7
skeletal muscle satellite cell
7
temporal lobe
6
22Rv1
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
GM12865
6
H1-hESC
6
HL-60
6
HeLa-S3
6
IMR-90
6
chondrocyte
6
foreskin melanocyte
6
hESC cell
6
induced pluripotent stem cell
6
mononuclear cell
6
neuroblastoma cell line
6
pancreatic alpha cell
6
psoas muscle
6
right renal cortex interstitium
6
right renal pelvis
5
cardiac fibroblast
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
BE(2)-C
5
BJ cell
5
CD14-positive, CD16-negative classical monocyte
5
CD1c-positive myeloid dendritic cell
5
CD4-positive helper T cell
5
CMK
5
Caco-2 cell
5
Ewing sarcoma
5
GM12875
5
GM19240
5
GM23248
5
HAP-1
5
HT-29
5
Jurkat
5
KARPAS-422 cell
5
MG63
5
PC-9
5
SGBS preadipocytes
5
SK-N-MC
5
SW480
5
T-helper 17 cell
5
T-helper 2 cell
5
acute myeloid leukemia
5
amygdala
5
chorionic villus
5
dermis blood vessel endothelial cell
5
enterocyte
5
epithelial cell of prostate
5
esophagus muscularis mucosa
5
esophagus squamous epithelium
5
hepatic stellate cell
5
midbrain
5
neurosphere
5
osteosarcoma
5
pancreatic delta cell
5
prostate cancer cell line
5
renal cortical epithelial cell
5
right lobe of liver
5
skeletal muscle fiber
5
thoracic aorta
5
trophoblast
4
B-lymphocyte
4
C1 segment of cervical spinal cord
4
COLO205
4
Daoy
4
GM08714
4
GM10248
4
GM10266
Organ
6
embryo
Life stage
2
embryonic
Date released
2
February, 2021
1
August, 2017
1
June, 2020
1
October, 2022
1
September, 2022
Software used
r
3
chromhmm
3
macs
Lab
5
AMP-T2D consortium
1
Stephen Parker, UMich
Project
6
AMP
RFA
6
AMP
software_used.software.name!
r
annotation_type!
target gene predictions
Showing 6 of 6 results
table-tab-icon
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Download
FileSet
DSR876GWY
released
Annotation file set
: Binding sites annotation for H1-hESC (H1-hESC) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR002BRL
released
Annotation file set
: Chromatin states for BSS00478 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR416QNM
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR188ZAX
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR165RXW
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR642714
released
Annotation file set
: ChromHMM 13-state model for H1
Lab:
Stephen Parker, UMich
Project:
AMP