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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
2
chromatin state
1
accessible chromatin
1
histone modifications
1
target gene predictions
Annotation Category
6
cis-regulatory elements
1
Target gene links
Annotation type Category
5
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
6
bed bed3+
1
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
6
cell line
1
stem cell
Biosample term
116
monocyte
49
heart
48
CD8-positive, alpha-beta T cell
47
stomach
46
kidney
40
brain
36
neural progenitor cell
35
lung
35
muscle of arm
33
adrenal gland
33
retina
33
small intestine
32
liver
32
muscle of leg
32
placenta
31
islet of Langerhans
30
large intestine
28
common myeloid progenitor, CD34-positive
28
muscle of back
27
macrophage
26
A549
26
endothelial cell
26
left lung
26
thymus
25
B cell
25
fibroblast
23
CD14-positive monocyte
23
heart left ventricle
23
right lung
22
hematopoietic multipotent progenitor cell
22
renal cortex interstitium
22
renal pelvis
22
right kidney
21
spinal cord
21
spleen
20
breast cancer cell
20
pericyte cell
19
pigmented layer of retina
18
left kidney
17
adipose tissue
17
embryonic stem cell
17
pancreas
17
smooth muscle cell
17
tibial nerve
16
adipocyte
16
keratinocyte
15
CD4-positive, alpha-beta T cell
15
EndoC_BH1
15
HepG2
15
MCF-7
15
caudate nucleus
15
coronary artery
15
endothelial cell of umbilical vein
15
foreskin fibroblast
15
subcutaneous adipose tissue
14
CD4-positive, alpha-beta memory T cell
14
cardiac muscle cell
14
natural killer cell
14
regulatory T cell
14
retinal pigment epithelial cell
13
K562
13
T cell
13
astrocyte
13
body of pancreas
13
foreskin keratinocyte
13
tibial artery
12
excitatory neuron
12
heart right ventricle
12
hepatocyte
12
lymphoblastoid cell line
12
mammary epithelial cell
12
neuroblastoma cell
12
osteoblast
12
putamen
12
right atrium auricular region
12
skeletal muscle myoblast
12
substantia nigra
12
trophoblast cell
11
erythroblast
11
mesenchymal stem cell
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
neutrophil
11
omental fat pad
11
ovary
11
psoas muscle
11
sigmoid colon
10
Rhabdomyosarcoma
10
fibroblast of lung
10
gastric cancer cell
10
neuronal stem cell
10
pancreatic ductal cell
10
testis
10
thyroid gland
9
Ammon's horn
9
ascending aorta
9
bronchial epithelial cell
9
diffuse intrinsic pontine glioma
9
frontal cortex
9
layer of hippocampus
9
liposarcoma
9
muscle of trunk
9
pancreatic beta cell
9
transverse colon
9
upper lobe of left lung
8
B-lymphoblastoid cell line
8
CD8-positive, alpha-beta memory T cell
8
GM12878
8
H9
8
cerebellum
8
fibroblast cell line
8
fibroblast of cardiac tissue
8
gastrocnemius medialis
8
pancreatic acinar cell
8
pancreatic alpha cell
8
pituitary stalk
8
prostate gland
8
skeletal muscle satellite cell
8
skeletal muscle tissue
7
H1-hESC
7
HEK293
7
HeLa-S3
7
IMR-90
7
Jurkat
7
Peyer's patch
7
T-helper 1 cell
7
aorta
7
choroid plexus epithelial cell
7
esophageal adenocarcinoma
7
left renal cortex interstitium
7
left renal pelvis
7
mammary gland epithelial cell
7
mature neutrophil
7
mesendoderm
7
pancreatic delta cell
7
temporal lobe
6
22Rv1
6
CD4-positive helper T cell
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
GM12865
6
HAP-1
6
KARPAS-422 cell
6
LNCAP
6
PC-9
6
breast epithelium
6
chondrocyte
6
colon epithelial cell
6
epithelial cell of prostate
6
foreskin melanocyte
6
hESC cell
6
induced pluripotent stem cell
6
mononuclear cell
6
neuroblastoma cell line
6
right renal cortex interstitium
6
right renal pelvis
6
trophoblast
6
uterus
5
cardiac fibroblast
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
BE(2)-C
5
BJ cell
5
CD14-positive, CD16-negative classical monocyte
5
CD1c-positive myeloid dendritic cell
5
CMK
5
Caco-2 cell
5
Ewing sarcoma
5
GM12875
5
GM19240
5
GM23248
5
HCT-116 cell
5
HL-60
5
HT-29
5
MG63
5
SGBS preadipocytes
5
SK-N-MC
5
SW480
5
T-helper 17 cell
5
T-helper 2 cell
5
acute myeloid leukemia
5
amygdala
5
chorionic villus
5
dermis blood vessel endothelial cell
5
esophagus muscularis mucosa
5
esophagus squamous epithelium
5
fibroblast of dermis
5
glutamatergic neuron
5
hepatic stellate cell
5
midbrain
5
neurosphere
5
osteosarcoma
5
prostate cancer cell line
5
renal cortical epithelial cell
5
right lobe of liver
5
skin fibroblast
5
smooth muscle cell of the coronary artery
Organ
7
embryo
Life stage
2
embryonic
Date released
February, 2024
2
February, 2021
1
August, 2017
1
June, 2020
1
May, 2021
1
October, 2022
1
September, 2022
Software used
r
3
chromhmm
3
macs
1
abc
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
1
Stephen Parker, UMich
Project
7
AMP
RFA
7
AMP
software_used.software.name!
r
month_released!
February, 2024
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR876GWY
released
Annotation file set
: Binding sites annotation for H1-hESC (H1-hESC) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR002BRL
released
Annotation file set
: Chromatin states for BSS00478 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR416QNM
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR188ZAX
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR922GBW
released
Annotation file set
: enhancer-gene predicton of H1-hESC-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR165RXW
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR642714
released
Annotation file set
: ChromHMM 13-state model for H1
Lab:
Stephen Parker, UMich
Project:
AMP