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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
2
chromatin state
1
accessible chromatin
1
candidate regulatory elements
1
histone modifications
Annotation Category
Target gene links
7
cis-regulatory elements
Annotation type Category
6
ChIP-seq
2
DNase-seq
Available data
6
bed bed3+
1
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
5
cell line
2
tissue
Biosample term
66
heart
60
kidney
57
brain
51
muscle of arm
48
stomach
46
lung
46
neural progenitor cell
45
placenta
44
muscle of leg
42
large intestine
41
muscle of back
40
small intestine
39
left lung
34
right lung
34
thymus
32
right kidney
31
renal cortex interstitium
31
renal pelvis
28
islet of Langerhans
27
CD8-positive, alpha-beta T cell
27
left kidney
27
spinal cord
26
adrenal gland
26
monocyte
25
fibroblast
25
macrophage
24
endothelial cell
EndoC_BH1
20
breast cancer cell
20
liver
20
pancreatic ductal cell
18
foreskin keratinocyte
17
B cell
17
CD4-positive, alpha-beta memory T cell
17
adipocyte
17
embryonic stem cell
16
foreskin fibroblast
16
keratinocyte
16
smooth muscle cell
15
H1-hESC
15
cardiac muscle cell
15
endothelial cell of umbilical vein
15
heart left ventricle
15
hepatocyte
15
induced pluripotent stem cell
15
retinal pigment epithelial cell
15
trophoblast cell
14
retina
13
HepG2
13
T-helper 17 cell
13
excitatory neuron
13
osteoblast
13
regulatory T cell
12
T cell
12
astrocyte
12
lymphoblastoid cell line
12
neuroblastoma cell
12
pericyte cell
11
bronchial epithelial cell
11
pancreatic acinar cell
10
Rhabdomyosarcoma
10
chorionic villus
10
gastric cancer cell
10
heart right ventricle
10
left cardiac atrium
10
mesenchymal stem cell
10
muscle of trunk
10
pancreatic beta cell
10
progenitor cell of endocrine pancreas
9
T-helper 1 cell
9
cardiomyocytes
9
choroid plexus epithelial cell
9
diffuse intrinsic pontine glioma
9
left renal cortex interstitium
9
left renal pelvis
9
liposarcoma
9
neuronal stem cell
9
neurosphere
9
skeletal muscle myoblast
8
22Rv1
8
H9
8
HEK293
8
SK-N-DZ
8
T-helper 2 cell
8
common myeloid progenitor, CD34-positive
8
fibroblast of cardiac tissue
8
pancreatic delta cell
8
right renal pelvis
8
skeletal muscle fiber
8
spleen
7
B-lymphoblastoid cell line
7
GM06990
7
GM12864
7
GM12865
7
IMR-90
7
NAMALWA cell
7
SK-N-MC
7
epithelial cell of prostate
7
erythroblast
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
fibroblast cell line
7
fibroblast of lung
7
mammary epithelial cell
7
mammary gland epithelial cell
7
neutrophil
7
pancreatic alpha cell
7
right renal cortex interstitium
7
tongue
6
AG04449 cell
6
AG04450 cell
6
BE(2)-C
6
BJ cell
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Chondroid Chordoma
6
MCF-7
6
MG63
6
PC-9
6
Rh-4 cell
6
SGBS preadipocytes
6
SK-N-SH
6
chondrocyte
6
endodermal cell
6
fibroblast of villous mesenchyme
6
foreskin melanocyte
6
glomerular endothelial cell
6
hESC cell
6
mesodermal cell
6
neuroblastoma cell line
6
pancreas
6
pancreatic stellate cell
6
skeletal muscle satellite cell
6
skin fibroblast
6
testis
6
trophoblast
5
CD4-positive helper T cell
5
CD8-positive, alpha-beta memory T cell
5
Daoy
5
Ewing sarcoma
5
GM08714
5
GM12891
5
GM12892
5
HUES6
5
Jurkat
5
K562
5
NT2-D1 cell
5
WERI-Rb-1
5
acute myeloid leukemia
5
cardiac precursors (cardiac muscle cell)
5
dermis lymphatic vessel endothelial cell
5
enterocyte
5
fibroblast of pulmonary artery
5
glomerular visceral epithelial cell
5
hematopoietic multipotent progenitor cell
5
kidney epithelial cell
5
limb
5
memory B cell
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
natural killer cell
5
osteosarcoma
5
prostate cancer cell line
5
pulmonary artery endothelial cell
5
renal cortical epithelial cell
5
skeletal muscle tissue
5
skin of body
5
type I muscle cell
4
A549
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
B-lymphocyte
4
CD4-positive, alpha-beta T cell
4
COLO205
4
Caco-2 cell
4
GM12873
4
GM12875
4
GM12878
4
GM18507
4
GM19240
4
H7-hESC
4
HAC cell
4
HBMEC cell
4
HCT-116 cell
4
HK-2 cell
4
HL-60
4
HS-SY-2 cell
4
HUES64
4
KARPAS-422 cell
4
L1-S8
4
Mantle cell lymphoma
4
NHEK
4
PANC-1 cell
4
T-cell acute lymphoblastic leukemia
4
WI38
4
acute myeloid leukemia cell
4
aortic endothelial cell
4
chorion membrane
4
colon epithelial cell
4
coronary artery
Organ
5
blood
5
bodily fluid
2
pancreas
Life stage
adult
2
unknown
Date released
2
February, 2021
2
September, 2022
1
August, 2017
1
June, 2020
1
October, 2022
Software used
3
chromhmm
3
macs
1
r
Lab
6
AMP-T2D consortium
1
Stephen Parker, UMich
Project
7
AMP
RFA
7
AMP
annotation_category!
Target gene links
biosample_term_name!
EndoC_BH1
relevant_life_stage!
adult
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR190KUB
released
Annotation file set
: Binding sites annotation for K562 (K562) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR293QVD
released
Annotation file set
: Candidate regulatory elements for BSS00282 endocrine pancreas from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR974BGU
released
Annotation file set
: Chromatin states for BSS00282 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR855GPE
released
Annotation file set
: Histone modifications annotation for Blood K-562 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR044RQC
released
Annotation file set
: Binding sites annotation for Blood K-562 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR191JBF
released
Annotation file set
: Accessible chromatin annotation for Blood K-562 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR418295
released
Annotation file set
: ChromHMM 13-state model for for human K562
Lab:
Stephen Parker, UMich
Project:
AMP