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Schema
Citing CMDGA
Clear Filters
Annotation type
3
gene expression
2
differential activity
1
target gene predictions
Annotation Category
5
Gene expression levels
1
Target gene links
cis-regulatory elements
Annotation type Category
5
single cell RNA-seq
1
ATAC-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
Available data
5
tsv
1
bed bed3+
File set status
6
released
Genome assembly (visualization)
1
hg19
Organism
6
Homo sapiens
Biosample type
5
primary cell
1
cell line
Biosample term
15
CD14-positive monocyte
15
endothelial cell
11
smooth muscle cell
10
fibroblast
10
pituitary stalk
9
pancreatic delta cell
9
pericyte cell
8
hepatocyte
8
induced pluripotent stem cell
8
kidney
8
pancreatic acinar cell
8
pancreatic alpha cell
8
pancreatic beta cell
8
pancreatic ductal cell
7
dendritic cell
7
macrophage
6
adipocyte
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD8-positive, alpha-beta T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
pancreatic stellate cell
4
CD4-positive helper T cell
4
cartilage tissue
4
endothelial cell of hepatic sinusoid
4
keratinocyte
4
mesenchymal stem cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
skeletal muscle fiber
4
type I muscle cell
4
type II muscle cell
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
astrocyte
3
basal cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
enterocyte
3
myofibroblast cell
3
natural killer cell
3
pancreatic A cell
3
pancreatic quiescent stellate cell
3
type B pancreatic cell
3
type II pneumocyte
2
BJAB cell
2
EndoC_BH1
2
Jurkat
2
MCF 10A cell
2
Schwann cell
2
T cell
2
T-cell
2
THP-1
2
U937
2
adrenal gland
2
articular chondrocyte
2
blood vessel smooth muscle cell
2
cardiac muscle cell
2
enteric smooth muscle cell
2
epithelial cell of esophagus
2
gabaergic neuron
2
glutamatergic neuron
2
goblet cell
2
liver
2
luminal epithelial cell of mammary gland
2
mammary gland epithelial cell
2
mast cell
2
memory B cell
2
mesothelial cell
2
monocyte
2
pancreatic polypeptide-secreting cell
2
parietal cell
2
peptic cell
2
skeletal muscle satellite cell
2
smooth muscle cell of the esophagus
2
stomach
2
subcutaneous adipose tissue
2
thyroid follicular cell
2
trophoblast cell
2
vascular associated smooth muscle cell
1
A549
1
A673
1
B cell
1
B cell, CD19-positive
1
B-1 B cell
1
B-2 B cell
1
CD4-positive, alpha-beta T cell
1
CD56-positive, CD161-positive immature natural killer cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
GM12878
1
H1-hESC
1
H7-hESC
1
H9
1
HAP-1
1
HCT-116 cell
1
HT-29
1
HeLa-S3
1
HepG2
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
IMR-90
1
K562
1
KARPAS-422 cell
1
LNCAP
1
LoVo cell
1
MCF-7
1
MDA-MB-231 cell
1
MM.1S
1
NCCIT cell
1
OCI-LY7
1
PC-9
1
Panc1
1
Pancreatic islets
1
SK-N-SH
1
Satellite Cells, Skeletal Muscle
1
T-helper 17 cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
adipose tissue
1
alternatively activated macrophage
1
alveolar macrophage
1
basal cell of epidermis
1
beige adipocyte
1
bipolar neuron
1
body of pancreas
1
breast epithelium
1
bronchial goblet cell
1
cardiac endothelial cell
1
cardiac ventricle
1
cell
1
ciliated cell
1
club cell
1
colon goblet cell
1
common myeloid progenitor, CD34-positive
1
conventional dendritic cell
1
coronary artery
1
eccrine cell
1
effector CD8-positive, alpha-beta T cell
1
endocardial cell
1
endothelial cell of lymphatic vessel
1
endothelial cell of umbilical vein
1
enteric neuron
Disease term
1
Acute kidney failure, unspecified
1
Chronic kidney disease (CKD)
1
acute kidney failure
1
chronic kidney disease
Organ
5
epithelium
5
kidney
1
blood
1
bodily fluid
Life stage
5
adult
Date released
5
September, 2023
1
May, 2021
Software used
3
r
2
deseq2
1
abc
Lab
AMP-T2D consortium
5
KPMP
1
Jesse Engreitz, Stanford University
Project
5
KPMP
1
AMP
RFA
5
KPMP
1
AMP
annotation_category!
cis-regulatory elements
lab.title!
AMP-T2D consortium
Showing 6 of 6 results
table-tab-icon
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Download
FileSet
DSR887EYM
released
Annotation file set
: Differential activity annotation of Degenerative Principal Cell between CKD and healthy individuals from KPMP scRNA-seq ( ~disease type + age + gender )
Lab:
KPMP
Project:
KPMP
FileSet
DSR497HXB
released
Annotation file set
: Differential activity annotation of Degenerative Principal Cell between AKI and healthy individuals from KPMP scRNA-seq ( ~disease type + age + gender )
Lab:
KPMP
Project:
KPMP
FileSet
DSR316ZAS
released
Annotation file set
: Gene expression annotation of Degenerative Principal Cell of healthy individuals from KPMP scRNA-seq
Lab:
KPMP
Project:
KPMP
FileSet
DSR052YZU
released
Annotation file set
: Gene expression annotation of Degenerative Principal Cell of CKD individuals from KPMP scRNA-seq
Lab:
KPMP
Project:
KPMP
FileSet
DSR293IJY
released
Annotation file set
: Gene expression annotation of Degenerative Principal Cell of AKI individuals from KPMP scRNA-seq
Lab:
KPMP
Project:
KPMP
FileSet
DSR412LFE
released
Annotation file set
: enhancer-gene predicton of K562-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP