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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
chromatin state
1
target gene predictions
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
DNase-seq
2
ChIP-seq
Available data
3
bed bed3+
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
cell line
3
primary cell
Biosample term
43
stomach
42
heart
39
kidney
34
muscle of arm
33
lung
31
brain
30
small intestine
29
adrenal gland
29
muscle of leg
29
retina
28
large intestine
28
muscle of back
27
common myeloid progenitor, CD34-positive
27
placenta
26
left lung
23
right lung
22
B cell
21
renal cortex interstitium
21
renal pelvis
21
right kidney
21
thymus
20
hematopoietic multipotent progenitor cell
20
pigmented layer of retina
18
left kidney
18
monocyte
17
liver
17
spleen
16
endothelial cell
16
fibroblast
15
neural progenitor cell
15
spinal cord
14
CD4-positive, alpha-beta memory T cell
14
heart left ventricle
13
excitatory neuron
12
CD8-positive, alpha-beta T cell
12
foreskin keratinocyte
12
macrophage
11
T cell
11
hepatocyte
11
pericyte cell
11
retinal pigment epithelial cell
11
sigmoid colon
11
smooth muscle cell
10
adipocyte
10
astrocyte
10
natural killer cell
10
pancreas
10
regulatory T cell
10
trophoblast cell
9
CD4-positive, alpha-beta T cell
9
T-helper 1 cell
9
adipose tissue
9
gastrocnemius medialis
9
ovary
9
thyroid gland
9
tibial nerve
9
transverse colon
8
CD14-positive monocyte
8
CD8-positive, alpha-beta memory T cell
8
Peyer's patch
8
body of pancreas
8
cardiac muscle cell
8
chorionic villus
8
endothelial cell of umbilical vein
8
muscle of trunk
8
pancreatic beta cell
8
pancreatic ductal cell
8
psoas muscle
8
testis
8
upper lobe of left lung
7
T-helper 17 cell
7
T-helper 2 cell
7
caudate nucleus
7
endocrine pancreas
7
esophagus squamous epithelium
7
foreskin fibroblast
7
heart right ventricle
7
islet of Langerhans
7
left renal cortex interstitium
7
left renal pelvis
7
mesenchymal stem cell
7
mononuclear cell
7
neurosphere
7
omental fat pad
7
osteoblast
7
pancreatic acinar cell
7
pancreatic alpha cell
7
right renal pelvis
7
skeletal muscle satellite cell
6
breast epithelium
6
coronary artery
6
dermis blood vessel endothelial cell
6
embryonic stem cell
6
endothelial cell of hepatic sinusoid
6
esophagus muscularis mucosa
6
fibroblast of lung
6
glutamatergic neuron
6
layer of hippocampus
6
lower leg skin
6
right atrium auricular region
6
right renal cortex interstitium
6
skeletal muscle myoblast
6
skeletal muscle tissue
6
tibial artery
5
SGBS preadipocytes
5
ascending aorta
5
bronchial epithelial cell
5
chondrocyte
5
erythroblast
5
eye
5
fibroblast of cardiac tissue
5
foreskin melanocyte
5
gastroesophageal sphincter
5
inhibitory neuron
5
keratinocyte
5
kidney tubule cell
5
mammary gland epithelial cell
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
pancreatic delta cell
5
parathyroid adenoma
5
prostate gland
5
skeletal muscle fiber
5
skin fibroblast
5
subcutaneous abdominal adipose tissue
5
substantia nigra
5
temporal lobe
5
thoracic aorta
5
tongue
5
trophoblast
4
Ammon's horn
4
T-cell
4
angular gyrus
4
aorta
4
cerebellum
4
chorion membrane
4
cingulate gyrus
4
colonic mucosa
4
duodenal mucosa
4
endodermal cell
4
epithelial cell of prostate
4
esophagus
4
fibroblast of breast
4
fibroblast of dermis
4
frontal cortex
4
globus pallidus
4
glomerular endothelial cell
4
glomerular visceral epithelial cell
4
hepatic stellate cell
4
kidney glomerular epithelial cell
4
limb
4
mammary epithelial cell
4
memory B cell
4
mesodermal cell
4
mucosa of rectum
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
neural cell
4
neuron
4
neutrophil
4
pancreatic stellate cell
4
peripheral blood mononuclear cell
4
putamen
4
renal cortical epithelial cell
4
stomach smooth muscle
4
subcutaneous adipose tissue
4
type II pneumocyte
4
urinary bladder
4
uterus
4
vagina
3
cardiac fibroblast
3
CD1c-positive myeloid dendritic cell
3
astrocyte of the cerebellum
3
astrocyte of the hippocampus
3
bipolar neuron
3
brain microvascular endothelial cell
3
cardiac fibroblast
3
cerebellar cortex
3
choroid plexus epithelial cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
dermis microvascular lymphatic vessel endothelial cell
3
endothelial cell of lymphatic vessel
3
enterocyte
3
epithelial cell of proximal tubule
3
fibroblast of mammary gland
3
fibroblast of peridontal ligament
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
gabaergic neuron
3
iris pigment epithelial cell
3
kidney epithelial cell
3
left cardiac atrium
3
luminal epithelial cell of mammary gland
3
lung microvascular endothelial cell
3
medulla oblongata
3
mesendoderm
3
midbrain
3
middle frontal gyrus
3
naive B cell
Organ
3
brain
Life stage
2
unknown
Date released
1
February, 2021
1
January, 2020
1
September, 2022
Software used
1
encode-ccres
1
macs
1
r
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
biosample_type!
cell line
Showing 3 of 3 results
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Download
FileSet
DSR679IUJ
released
Annotation file set
: Candidate regulatory elements for BSS00090 astrocyte of the cerebellum from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR967JTX
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE astrocyte of the cerebellum
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR656EMP
released
Annotation file set
: Accessible chromatin annotation of brain cerebellum astrocyte from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP