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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
1
histone modifications
Annotation Category
17
Target gene links
6
cis-regulatory elements
Annotation type Category
5
ChIP-seq
2
DNase-seq
Available data
6
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
6
cell line
Biosample term
105
monocyte
43
CD8-positive, alpha-beta T cell
31
neural progenitor cell
30
kidney
28
retina
27
heart
25
stomach
21
brain
20
breast cancer cell
20
fibroblast
20
pigmented layer of retina
18
endothelial cell
18
muscle of arm
18
muscle of leg
17
lung
16
B cell
16
embryonic stem cell
16
large intestine
16
placenta
15
adrenal gland
15
liver
15
macrophage
15
muscle of back
15
small intestine
14
adipocyte
14
common myeloid progenitor, CD34-positive
14
hepatocyte
13
left lung
13
retinal pigment epithelial cell
12
CD4-positive, alpha-beta T cell
12
cardiac muscle cell
12
excitatory neuron
12
hematopoietic multipotent progenitor cell
12
neuroblastoma cell
12
renal pelvis
12
right lung
12
spinal cord
11
endothelial cell of hepatic sinusoid
11
foreskin fibroblast
11
heart left ventricle
11
islet of Langerhans
11
mammary epithelial cell
11
pancreas
11
renal cortex interstitium
11
thymus
10
EndoC_BH1
10
MCF-7
10
Rhabdomyosarcoma
10
endothelial cell of umbilical vein
10
gastric cancer cell
10
keratinocyte
10
pancreatic ductal cell
10
pericyte cell
10
spleen
9
astrocyte
9
diffuse intrinsic pontine glioma
9
liposarcoma
9
neuronal stem cell
9
osteoblast
9
right kidney
9
smooth muscle cell
8
HepG2
8
foreskin keratinocyte
7
A549
7
B-lymphoblastoid cell line
7
T cell
7
T-cell acute lymphoblastic leukemia
7
acute myeloid leukemia
7
erythroblast
7
esophageal adenocarcinoma
7
fibroblast cell line
7
mature neutrophil
7
mesenchymal stem cell
7
natural killer cell
7
pancreatic acinar cell
7
skeletal muscle myoblast
7
tibial nerve
6
Chondroid Chordoma
6
GM12878
6
H9
6
HEK293
6
K562
6
Rh-4 cell
6
SGBS preadipocytes
6
T-helper 1 cell
6
bronchial epithelial cell
6
chondrocyte
6
hESC cell
6
left cardiac atrium
6
left kidney
6
neuroblastoma cell line
6
pancreatic beta cell
6
regulatory T cell
6
testis
6
upper lobe of left lung
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive, alpha-beta memory T cell
5
Ewing sarcoma
5
GM06990
5
GM12864
5
GM12865
5
H1-hESC
5
HL-60
5
IMR-90
5
Jurkat
5
LNCAP
5
Peyer's patch
5
RS4-11 cell
5
SK-N-MC
5
Th1 cell
5
WERI-Rb-1
5
fibroblast of cardiac tissue
hepatic stellate cell
5
lymphoblastoid cell line
5
osteosarcoma
5
prostate cancer cell line
5
sigmoid colon
5
skeletal muscle satellite cell
5
temporal lobe
4
22Rv1
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
B-lymphocyte
4
BE(2)-C
4
BJ cell
4
CD14-positive monocyte
4
CD1c-positive myeloid dendritic cell
4
CMK
4
COLO205
4
Caco-2 cell
4
GM12873
4
GM12875
4
GM19240
4
GM23248
4
HAC cell
4
HAP-1
4
HBMEC cell
4
HCT-116 cell
4
HS-SY-2 cell
4
HT-29
4
Ishikawa
4
KARPAS-422 cell
4
LHCN-M2
4
MG63
4
MM.1S
4
Mantle cell lymphoma
4
NHEK
4
NT2-D1 cell
4
Normal Human Astrocytes
4
OCI-LY7
4
PANC-1 cell
4
PC-3
4
PC-9
4
RKO
4
RPMI8226
4
RWPE1
4
SK-N-DZ
4
SK-N-SH_RA
4
SW480
4
T-47D cell
4
T-helper 17 cell
4
U-266 cell
4
U2OS
4
WI-38 cell
4
WI38
4
acute myeloid leukemia cell
4
adipose tissue
4
aorta
4
ascending aorta
4
caudate nucleus
4
choroid plexus epithelial cell
4
coronary artery
4
diffuse large B-cell lymphoma
4
erythroid cell
4
esophageal squamous cell carcinoma
4
esophagus squamous epithelium
4
fibroblast of lung
4
foreskin melanocyte
4
heart right ventricle
4
left renal pelvis
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
pancreatic alpha cell
4
pancreatic delta cell
4
right renal pelvis
4
squamous cell lung carcinoma
4
substantia nigra
4
synovial sarcoma cell
4
tibial artery
4
tracheal epithelial cell
4
triple-negative breast cancer
4
trophoblast cell
3
cardiac fibroblast
3
786-O cell
3
A-673 cell
3
Ammon's horn
3
CD4-positive helper T cell
3
COLO-320 cell
Organ
6
blood
6
bodily fluid
Life stage
1
adult
Date released
September, 2022
3
February, 2021
1
August, 2017
1
June, 2020
1
October, 2022
Software used
3
macs
2
chromhmm
1
encode-ccres
Lab
5
AMP-T2D consortium
1
Stephen Parker, UMich
Project
6
AMP
RFA
6
AMP
biosample_term_name!
hepatic stellate cell
month_released!
September, 2022
Showing 6 of 6 results
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Download
FileSet
DSR190KUB
released
Annotation file set
: Binding sites annotation for K562 (K562) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR396CCK
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE K562
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR855GPE
released
Annotation file set
: Histone modifications annotation for Blood K-562 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR044RQC
released
Annotation file set
: Binding sites annotation for Blood K-562 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR191JBF
released
Annotation file set
: Accessible chromatin annotation for Blood K-562 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR418295
released
Annotation file set
: ChromHMM 13-state model for for human K562
Lab:
Stephen Parker, UMich
Project:
AMP