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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
target gene predictions
2
binding sites
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
1
histone modifications
Annotation Category
6
cis-regulatory elements
Annotation type Category
5
ChIP-seq
2
DNase-seq
Available data
6
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
6
cell line
Biosample term
128
monocyte
46
CD8-positive, alpha-beta T cell
43
islet of Langerhans
39
kidney
38
neural progenitor cell
34
endothelial cell
32
heart
31
retina
29
hepatocyte
28
macrophage
27
fibroblast
27
stomach
25
brain
25
liver
22
EndoC_BH1
22
pancreatic ductal cell
21
subcutaneous adipose tissue
20
breast cancer cell
20
epithelial cell of proximal tubule
20
pigmented layer of retina
19
lung
19
muscle of arm
18
B cell
18
glomerular endothelial cell
18
muscle of leg
17
adrenal gland
17
embryonic stem cell
17
heart left ventricle
17
placenta
17
regulatory T cell
16
adipocyte
16
endothelial cell of hepatic sinusoid
16
large intestine
16
small intestine
15
induced pluripotent stem cell
15
muscle of back
15
smooth muscle cell
15
tibial nerve
14
T-helper 1 cell
14
common myeloid progenitor, CD34-positive
14
pancreatic acinar cell
14
pancreatic beta cell
13
H1-hESC
13
cardiac muscle cell
13
caudate nucleus
13
coronary artery
13
excitatory neuron
13
hematopoietic multipotent progenitor cell
13
left lung
13
pancreatic alpha cell
13
renal cortex interstitium
13
renal pelvis
13
retinal pigment epithelial cell
13
spinal cord
13
spleen
12
CD4-positive, alpha-beta T cell
12
lymphoblastoid cell line
12
natural killer cell
12
neuroblastoma cell
12
osteoblast
12
pancreas
12
right atrium auricular region
12
right lung
12
substantia nigra
11
T cell
11
T-helper 17 cell
11
endothelial cell of umbilical vein
11
foreskin fibroblast
11
keratinocyte
11
mammary epithelial cell
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
omental fat pad
11
putamen
11
thymus
11
tibial artery
10
MCF-7
10
Rhabdomyosarcoma
10
adipose tissue
10
astrocyte
10
body of pancreas
10
frontal cortex
10
gastric cancer cell
10
mesenchymal stem cell
10
pericyte cell
10
progenitor cell of endocrine pancreas
10
right kidney
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
liposarcoma
9
neuronal stem cell
9
skeletal muscle myoblast
9
skeletal muscle satellite cell
9
testis
8
Ammon's horn
8
ascending aorta
8
foreskin keratinocyte
8
glomerular visceral epithelial cell
8
left cardiac atrium
8
pancreatic delta cell
8
pancreatic stellate cell
8
skeletal muscle fiber
7
A549
7
B-lymphoblastoid cell line
7
HepG2
7
amygdala
7
cerebellum
7
erythroblast
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
fibroblast cell line
hepatic stellate cell
7
mature neutrophil
7
temporal lobe
6
Chondroid Chordoma
6
GM12878
6
H9
6
HEK293
6
anterior cingulate cortex
6
bronchial epithelial cell
6
chondrocyte
6
hESC cell
6
heart right ventricle
6
hypothalamus
6
left kidney
6
neuroblastoma cell line
6
neutrophil
6
nucleus accumbens
6
ovary
6
upper lobe of left lung
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
CD4-positive, alpha-beta memory T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Ewing sarcoma
5
Fibroblast
5
GM06990
5
GM12864
5
GM12865
5
Glomerular Capillary Endothelial Cell
5
HL-60
5
IMR-90
5
Jurkat
5
K562
5
Lymphatic Endothelial Cell
5
Natural Killer T Cell
5
Non-Classical Monocyte
5
SGBS preadipocytes
5
T-helper 2 cell
5
acute myeloid leukemia
5
cardiac precursors (cardiac muscle cell)
5
choroid plexus epithelial cell
5
enterocyte
5
fibroblast of cardiac tissue
5
kidney interstitial cell
5
kidney loop of Henle thin ascending limb epithelial cell
5
mast cell
5
memory B cell
5
mesangial cell
5
osteosarcoma
5
prostate cancer cell line
5
prostate gland
5
right lobe of liver
5
sigmoid colon
5
smooth muscle cell of the coronary artery
5
type I muscle cell
4
22Rv1
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
B-lymphocyte
Organ
6
blood
6
bodily fluid
Life stage
1
adult
Date released
September, 2022
3
February, 2021
1
August, 2017
1
June, 2020
1
October, 2022
Software used
3
macs
2
chromhmm
1
encode-ccres
Lab
5
AMP-T2D consortium
1
Stephen Parker, UMich
Project
6
AMP
RFA
6
AMP
biosample_term_name!
hepatic stellate cell
month_released!
September, 2022
annotation_type!
target gene predictions
Showing 6 of 6 results
table-tab-icon
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Download
FileSet
DSR190KUB
released
Annotation file set
: Binding sites annotation for K562 (K562) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR396CCK
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE K562
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR855GPE
released
Annotation file set
: Histone modifications annotation for Blood K-562 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR044RQC
released
Annotation file set
: Binding sites annotation for Blood K-562 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR191JBF
released
Annotation file set
: Accessible chromatin annotation for Blood K-562 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR418295
released
Annotation file set
: ChromHMM 13-state model for for human K562
Lab:
Stephen Parker, UMich
Project:
AMP