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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
chromatin state
Annotation Category
4
cis-regulatory elements
Annotation type Category
10
ChIP-seq
DNase-seq
Available data
4
bed bed9
2
bigBed bed9
File set status
4
released
Genome assembly (visualization)
4
GRCh38
4
hg19
Organism
4
Homo sapiens
Biosample type
cell line
4
tissue
Biosample term
128
monocyte
44
islet of Langerhans
41
CD8-positive, alpha-beta T cell
41
endothelial cell
38
neural progenitor cell
34
kidney
31
fibroblast
28
heart
28
hepatocyte
28
macrophage
28
retina
27
liver
25
brain
22
pancreatic ductal cell
22
smooth muscle cell
22
stomach
20
pericyte cell
20
pigmented layer of retina
19
B cell
19
lung
19
subcutaneous adipose tissue
18
adipose tissue
18
epithelial cell of proximal tubule
18
pancreatic beta cell
18
placenta
18
regulatory T cell
17
adrenal gland
17
pancreatic alpha cell
17
small intestine
16
adipocyte
16
endothelial cell of hepatic sinusoid
16
muscle of arm
16
pancreatic acinar cell
16
pancreatic delta cell
15
embryonic stem cell
15
glomerular endothelial cell
15
heart left ventricle
15
muscle of leg
14
T cell
14
excitatory neuron
14
large intestine
14
thymus
13
T-helper 1 cell
13
T-helper 17 cell
13
astrocyte
13
common myeloid progenitor, CD34-positive
13
coronary artery
13
hematopoietic multipotent progenitor cell
13
left lung
13
muscle of back
12
natural killer cell
12
tibial nerve
11
cardiomyocytes
11
caudate nucleus
11
keratinocyte
11
mesenchymal stem cell
11
right lung
10
body of pancreas
10
cerebellum
10
erythroblast
10
naive thymus-derived CD4-positive, alpha-beta T cell
10
omental fat pad
10
osteoblast
10
pancreatic stellate cell
10
right atrium auricular region
10
skeletal muscle satellite cell
10
substantia nigra
9
CD4-positive, alpha-beta memory T cell
9
T-helper 2 cell
9
extended pluripotent stem (EPS) cells
9
frontal cortex
9
induced pluripotent stem cell
9
left kidney
9
mammary gland epithelial cell
9
mature neutrophil
9
memory B cell
9
naive thymus-derived CD8-positive, alpha-beta T cell
9
neutrophil
9
renal pelvis
9
retinal pigment epithelial cell
9
spleen
9
tibial artery
8
T-cell acute lymphoblastic leukemia
8
ascending aorta
8
cardiomyocytes (cardiac muscle cell)
8
endothelial cell of umbilical vein
8
glutamatergic neuron
8
heart right ventricle
8
mammary epithelial cell
8
neuroblastoma cell line
8
pancreas
8
progenitor cell of endocrine pancreas
8
right kidney
8
skeletal muscle fiber
7
Ammon's horn
7
CD4-positive, alpha-beta T cell
7
CD8-positive, alpha-beta memory T cell
7
amygdala
7
aorta
7
foreskin fibroblast
7
glomerular visceral epithelial cell
7
hypothalamus
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
layer of hippocampus
7
left cardiac atrium
7
mesangial cell
7
mononuclear cell
7
nucleus accumbens
7
ovary
7
prostate gland
7
psoas muscle
7
putamen
7
temporal lobe
6
alternatively activated macrophage
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
colon epithelial cell
6
cortical cell of adrenal gland
6
enterocyte
6
fibroblast of cardiac tissue
6
fibroblast of lung
6
foreskin keratinocyte
6
gamma-delta T cell
6
mast cell
6
naive B cell
6
neuronal stem cell
6
olfactory receptor cell
6
plasma cell
6
renal cortex interstitium
6
skeletal muscle myoblast
6
skeletal muscle tissue
6
spinal cord
6
type I muscle cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
SGBS preadipocytes
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
basal cell
5
bronchial epithelial cell
5
cartilage tissue
5
central memory CD8-positive, alpha-beta T cell
5
cerebellum (Hemisphere)
5
chondrocyte
5
effector memory CD8-positive, alpha-beta T cell
Organ
4
brain
Life stage
4
adult
Date released
2
May, 2019
2
September, 2022
Software used
4
chromhmm
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
disease_term_name!
Philadelphia-positive myelogenous leukemia
biosample_type!
cell line
annotation_type_category!
DNase-seq
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR388ZII
released
Annotation file set
: Chromatin states for BSS00078 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR238SJX
released
Annotation file set
: Chromatin states for BSS00077 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR461MVG
released
Annotation file set
: ChromHMM 18-state model for angular gyrus from ENCODE ChIP-seq data. ROADMAP Brain Angular Gyrus Annotation
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR483MDQ
released
Annotation file set
: ChromHMM 15-state model for angular gyrus from ENCODE ChIP-seq data. ROADMAP Brain Angular Gyrus Annotation
Lab:
AMP-T2D consortium
Project:
AMP