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Annotation type
1
chromatin state
Annotation Category
Target gene links
1
cis-regulatory elements
Annotation type Category
1
ChIP-seq
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
cell line
Biosample term
23
endothelial cell
22
fibroblast
16
endothelial cell of hepatic sinusoid
16
macrophage
15
kidney
13
smooth muscle cell
12
excitatory neuron
12
hepatocyte
11
pancreatic acinar cell
11
pancreatic ductal cell
10
pancreatic alpha cell
10
pancreatic beta cell
10
pericyte cell
9
pancreatic delta cell
9
skeletal muscle fiber
8
T cell
8
adipocyte
8
pancreatic stellate cell
7
astrocyte
7
induced pluripotent stem cell
6
enterocyte
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
erythroblast
5
inhibitory neuron
5
left cardiac atrium
5
pancreatic endothelial cell
5
skeletal muscle satellite cell
5
type I muscle cell
5
type II muscle cell
5
type II pneumocyte
4
B cell
4
basal cell
4
cartilage tissue
4
cortical cell of adrenal gland
4
islet of Langerhans
4
keratinocyte
4
mesenchymal stem cell
4
myofibroblast cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
3
CD4-positive helper T cell
3
CD8-positive, alpha-beta T cell
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
Schwann cell
3
colon epithelial cell
3
endothelial cell of lymphatic vessel
3
glial cell
3
goblet cell
3
liver
3
mesothelial cell
3
natural killer cell
3
pancreatic polypeptide-secreting cell
3
pancreatic quiescent stellate cell
3
subcutaneous adipose tissue
3
type I pneumocyte
2
ESC derived cell line
2
EndoC_BH1
2
Muller cell
2
blood vessel smooth muscle cell
2
capillary endothelial cell
2
ciliated cell
2
club cell
2
endocardial cell
2
enteric neuron
2
enteric smooth muscle cell
2
epithelial cell of esophagus
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of cardiac tissue
2
gabaergic neuron
2
glutamatergic neuron
2
kidney distal convoluted tubule epithelial cell
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mammary gland epithelial cell
2
mast cell
2
megakaryocyte
2
memory B cell
2
mesangial cell
2
neural cell
2
oligodendrocyte precursor cell
2
parietal cell
2
peptic cell
2
renal principal cell
2
schwann cell
2
smooth muscle cell of the esophagus
2
thyroid follicular cell
2
vascular associated smooth muscle cell
1
B-1 B cell
1
B-2 B cell
1
CD34-PB
1
CD4-positive, alpha-beta T cell
1
GM12878
1
H1-hESC
1
HepG2
1
K562
1
Pancreatic islets
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
Satellite Cells, Skeletal Muscle
1
T-helper 17 cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
alternatively activated macrophage
1
alveolar macrophage
1
basal cell of epidermis
1
bronchial goblet cell
1
cardiac endothelial cell
1
cardiac muscle cell
1
caudate nucleus
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
cingulate gyrus
1
colon goblet cell
1
colonic mucosa
1
conventional dendritic cell
1
dendritic cell
1
duodenal mucosa
1
eccrine cell
1
effector CD8-positive, alpha-beta T cell
1
embryonic stem cell
1
endothelial cell of artery
1
endothelial cell of umbilical vein
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
epithelial cell of proximal tubule
1
erythrocyte
1
extravillous trophoblast
1
fetal thymocyte
1
fibroblast of lung
1
foveolar cell of stomach
1
gastric goblet cell
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
granular cell of epidermis
1
granulosa cell
1
hepatic stellate cell
1
hepatoblast
1
inflammatory macrophage
1
intestinal tuft cell
Organ
1
blood
1
bodily fluid
Date released
1
August, 2017
Software used
1
chromhmm
Lab
AMP-T2D consortium
1
Stephen Parker, UMich
Project
1
AMP
RFA
1
AMP
lab.title!
AMP-T2D consortium
annotation_category!
Target gene links
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Download
FileSet
TSTSR418295
released
Annotation file set
: ChromHMM 13-state model for for human K562
Lab:
Stephen Parker, UMich
Project:
AMP