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Schema
Citing CMDGA
Clear Filters
Annotation type
1
binding sites
1
candidate regulatory elements
1
histone modifications
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
4
cell line
Biosample term
121
monocyte
41
CD8-positive, alpha-beta T cell
25
kidney
24
stomach
21
heart
20
breast cancer cell
19
CD14-positive monocyte
17
EndoC_BH1
17
brain
17
lung
17
muscle of arm
16
adrenal gland
16
embryonic stem cell
16
placenta
15
common myeloid progenitor, CD34-positive
15
epithelial cell of proximal tubule
15
large intestine
15
muscle of back
15
small intestine
14
muscle of leg
13
glomerular endothelial cell
13
left lung
12
hematopoietic multipotent progenitor cell
12
islet of Langerhans
12
neuroblastoma cell
11
cardiomyocytes
11
thymus
10
B cell
10
cardiac muscle cell
10
diffuse intrinsic pontine glioma
10
gastric cancer cell
10
liver
10
mammary epithelial cell
10
renal cortex interstitium
10
right lung
9
MCF-7
9
Rhabdomyosarcoma
9
adipocyte
9
endothelial cell
9
foreskin fibroblast
9
foreskin keratinocyte
9
induced pluripotent stem cell
9
liposarcoma
9
neuronal stem cell
9
renal pelvis
8
CD4-positive, alpha-beta T cell
8
T-cell acute lymphoblastic leukemia
8
esophageal adenocarcinoma
8
pituitary stalk
8
right kidney
8
spinal cord
8
spleen
7
B-lymphoblastoid cell line
7
H9
7
fibroblast cell line
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
natural killer cell
6
A549
6
Chondroid Chordoma
6
Jurkat
6
T-cell
6
acute myeloid leukemia
6
adipose tissue
6
bronchial epithelial cell
6
endothelial cell of umbilical vein
6
hESC cell
6
heart left ventricle
6
keratinocyte
6
left kidney
6
neuroblastoma cell line
6
osteoblast
5
CD4-positive, alpha-beta memory T cell
5
Ewing sarcoma
5
HepG2
5
LNCAP
5
T-helper 1 cell
5
body of pancreas
5
dendritic cell
5
epithelial cell of prostate
5
esophageal squamous cell carcinoma
5
foreskin melanocyte
5
kidney interstitial cell
5
kidney loop of Henle thin ascending limb epithelial cell
5
neural progenitor cell
5
osteosarcoma
5
pancreas
5
prostate cancer cell line
5
sigmoid colon
5
testis
5
trophoblast cell
4
22Rv1
4
GM12878
4
HAP-1
4
HEK293
4
HS-SY-2 cell
4
HT-29
4
IMR-90
4
K562
4
MM.1S
4
Mantle cell lymphoma
4
OCI-LY7
4
PC-9
4
Peyer's patch
4
RS4-11 cell
4
Rh-4 cell
4
T-helper 17 cell
4
T-helper 2 cell
4
Th1 cell
4
Tumor-derived cell line
4
U937
4
WI38
4
bone tissue
4
breast epithelium
4
cardiac fibroblast
4
colon adenocarcinoma
4
dermal fibroblast
4
diffuse large B-cell lymphoma
4
erythroid progenitor cell
4
esophagus squamous epithelium
4
fibroblast of lung
4
gastroesophageal sphincter
4
glioblastoma cell
4
glioblastoma multiforme cancer stem cell
4
glioma cell
4
hepatocyte
4
macrophage
4
mesenchymal stem cell
4
nephron progenitor
4
neutrophil
4
ovary
4
right renal pelvis
4
skeletal muscle myoblast
4
smooth muscle cell of the coronary artery
4
squamous cell lung carcinoma
4
synovial sarcoma cell
4
tracheal epithelial cell
4
triple-negative breast cancer
4
upper lobe of left lung
3
B-lymphocyte
3
BJAB cell
3
CD1c-positive myeloid dendritic cell
3
CD4-positive helper T cell
3
CMK
3
COLO-320 cell
3
COLO205
3
GM06990
3
GM12864
3
GM12865
3
GM12873
3
GM12875
3
GM23248
3
H1-hESC
3
HCT-116 cell
3
HL-60
3
HeLa-S3
3
Ishikawa
3
KARPAS-422 cell
3
LHCN-M2
3
LoVo cell
3
MCF 10A
3
MCF 10A cell
3
MDA-MB-231 cell
3
MG63
3
NCCIT cell
3
OCI-LY1
3
PC-3
3
RKO
3
RPMI8226
3
RWPE1
3
S-shaped body
3
SK-N-DZ
3
SK-N-MC
3
SK-N-SH
3
SW480
3
THP-1
3
WERI-Rb-1
3
adult endothelial progenitor cell
3
ascending aorta
3
astrocyte
3
cardiac precursors (cardiac muscle cell)
3
cardiomyocytes (cardiac muscle cell)
3
caudate nucleus
3
chorionic villus
3
chronic lymphocytic leukemia cell
3
dermis blood vessel endothelial cell
3
dermis microvascular lymphatic vessel endothelial cell
3
endocrine pancreas
3
endodermal cell
3
esophagus muscularis mucosa
3
fibroblast
3
fibroblast of mammary gland
3
gamma-delta T cell
3
gastrocnemius medialis
3
glomerular visceral epithelial cell
3
hepatic stellate cell
3
immortal neural cell line cell
3
leukemic stem cell
3
lower leg skin
3
lymphoblastoid cell line
3
melanoma
Organ
4
blood
4
bodily fluid
Life stage
1
adult
Date released
18
September, 2022
16
February, 2024
3
February, 2021
1
August, 2017
1
June, 2020
1
May, 2021
1
October, 2022
Software used
2
macs
1
abc
1
encode-ccres
Lab
3
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
4
AMP
RFA
4
AMP
Showing 4 of 4 results
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Download
FileSet
DSR396CCK
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE K562
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR855GPE
released
Annotation file set
: Histone modifications annotation for Blood K-562 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR044RQC
released
Annotation file set
: Binding sites annotation for Blood K-562 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR412LFE
released
Annotation file set
: enhancer-gene predicton of K562-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP