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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
12
candidate regulatory elements
6
target gene predictions
5
accessible chromatin
3
binding sites
3
chromatin state
2
histone modifications
1
variant allelic effects
Annotation Category
6
Target gene links
Annotation type Category
4
ATAC-seq
2
pCHi-C
1
DNase-seq
1
H3K27ac ChIP-Seq
Available data
6
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
3
GRCh38
Organism
6
Homo sapiens
Biosample type
5
primary cell
1
cell line
Biosample term
55
HeLa-S3
39
H1-hESC
23
K562
21
stomach
20
heart
19
A549
19
CD14-positive monocyte
19
HFFc6
17
adrenal gland
17
lung
17
small intestine
16
brain
16
muscle of arm
15
placenta
14
common myeloid progenitor, CD34-positive
14
kidney
14
large intestine
14
muscle of leg
14
thymus
13
left lung
13
muscle of back
11
right lung
10
B cell
10
hematopoietic multipotent progenitor cell
10
liver
10
pericyte cell
10
pituitary stalk
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
left kidney
9
renal cortex interstitium
9
renal pelvis
8
GM12878
8
H9
8
adipose tissue
8
psoas muscle
8
spinal cord
8
spleen
7
CD8-positive, alpha-beta memory T cell
7
endothelial cell
7
heart left ventricle
7
lymphocyte
7
sigmoid colon
7
smooth muscle cell
7
trophoblast cell
6
adipocyte
6
dendritic cell
6
mononuclear cell
6
olfactory receptor cell
6
ovary
5
CD8-positive, alpha-beta T cell
5
body of pancreas
5
gastrocnemius medialis
5
heart right ventricle
5
keratinocyte
5
muscle of trunk
5
natural killer cell
5
neural progenitor cell
5
pancreas
5
thyroid gland
5
transverse colon
4
CyT49
4
HUES8
4
T cell
4
aorta
4
astrocyte
4
chorionic villus
4
colon epithelial cell
4
endocrine pancreas
4
endothelial cell of umbilical vein
4
fibroblast
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
hepatocyte
4
iPSC derived cell line
4
macrophage
4
mammary gland epithelial cell
4
mesenchymal stem cell
4
pancreatic delta cell
4
regulatory T cell
3
CD4-positive, alpha-beta T cell
3
HCT116
3
HepG2
3
Peyer's patch
3
SK-N-SH
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
breast epithelium
3
cardiomyocytes (cardiac muscle cell)
3
caudate nucleus
3
chorion membrane
3
coronary artery
3
endometrium adenocarcinoma
3
epithelial cell of prostate
3
esophagus
3
foreskin fibroblast
3
immortal human breast epithelial cell line cell
3
layer of hippocampus
3
luminal epithelial cell of mammary gland
3
mesendoderm
3
monocyte
3
naive T cell
3
neurosphere
3
neutrophil
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic ductal cell
3
retina
3
skeletal muscle myoblast
3
skeletal muscle tissue
3
skin fibroblast
3
testis
3
tibial nerve
3
trophoblast
3
type B pancreatic cell
3
upper lobe of left lung
2
22Rv1
2
A673
2
Ammon's horn
2
BJAB cell
2
Brodmann (1909) area 46
2
CD4-positive helper T cell
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
H7-hESC
2
HAP-1
2
HT-29
2
IMR-90
2
Jurkat
2
KARPAS-422 cell
2
LNCaP clone FGC
2
LoVo cell
2
MCF 10A cell
2
MM.1S
2
NAMALWA cell
2
OCI-LY7
2
PC-9
2
Panc1
2
SK-N-DZ
2
T-cell
2
T47D
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
angular gyrus
2
ascending aorta
2
bipolar neuron
2
blood vessel smooth muscle cell
2
bronchial epithelial cell
2
cardiac muscle cell
2
cerebellum
2
cingulate gyrus
2
colonic mucosa
2
cortical cell of adrenal gland
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
duodenal mucosa
2
endodermal cell
2
enteric smooth muscle cell
2
erythroblast
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
fibroblast of breast
2
frontal cortex
2
gabaergic neuron
2
glutamatergic neuron
2
iPS DF 19.11
2
kidney tubule cell
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
lower leg skin
2
lymphocyte of B lineage (iPSC)
2
megakaryocyte
2
memory B cell
2
mucosa of rectum
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
omental fat pad
2
osteoblast
2
parathyroid adenoma
2
prostate gland
2
right atrium auricular region
2
right cardiac atrium
2
right renal cortex interstitium
2
right renal pelvis
2
skeletal muscle satellite cell
Disease term
breast cancer
Organ
2
adrenal gland
2
epithelium
1
mammary gland
Date released
3
November, 2021
2
May, 2020
1
May, 2021
Software used
4
abc
2
chicago
Lab
3
Bing Ren, UCSD
2
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
3
AMP
3
ENCODE
RFA
3
AMP
3
ENCODE3
disease_term_name!
breast cancer
Showing 6 of 6 results
table-tab-icon
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Download
FileSet
DSR430IHA
released
Annotation file set
: Target gene predictions of Transitional Zone Cortical Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR550FOW
released
Annotation file set
: Target gene predictions of T lymphocyte 2 (CD4+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR923ULB
released
Annotation file set
: Target gene predictions of Cortical Epithelial-like from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR249DLQ
released
Annotation file set
: enhancer-gene predicton of MCF-7-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR574MPN
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of CD4-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR267YBK
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of CD4-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP